miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30144 5' -53.8 NC_006273.1 + 106231 0.66 0.98477
Target:  5'- gCGGGUG-GCcaGCGGCGCCgGUUUgCCUa -3'
miRNA:   3'- -GUUUACuCGa-UGCCGCGGaCAGA-GGA- -5'
30144 5' -53.8 NC_006273.1 + 212265 0.66 0.98477
Target:  5'- ----cGAGUUGCGGUGuUCUGUCUgUCUa -3'
miRNA:   3'- guuuaCUCGAUGCCGC-GGACAGA-GGA- -5'
30144 5' -53.8 NC_006273.1 + 93579 0.66 0.976374
Target:  5'- ---uUGAGCgGCGGCGgCCUG-CgcggCCUg -3'
miRNA:   3'- guuuACUCGaUGCCGC-GGACaGa---GGA- -5'
30144 5' -53.8 NC_006273.1 + 39168 0.66 0.976374
Target:  5'- ----cGGGCUGCGGCGgUg--CUCCg -3'
miRNA:   3'- guuuaCUCGAUGCCGCgGacaGAGGa -5'
30144 5' -53.8 NC_006273.1 + 176034 0.67 0.973827
Target:  5'- ---uUGAGUUGCGGCGUuuCUGUgUCg- -3'
miRNA:   3'- guuuACUCGAUGCCGCG--GACAgAGga -5'
30144 5' -53.8 NC_006273.1 + 205404 0.67 0.972206
Target:  5'- aGGAUGGGCUGcCGGUGCCUuucgugauuuuccccGUCguguagCCa -3'
miRNA:   3'- gUUUACUCGAU-GCCGCGGA---------------CAGa-----GGa -5'
30144 5' -53.8 NC_006273.1 + 16932 0.67 0.968145
Target:  5'- aCAcAUGGGCgagGCGGCGC--GUCUUCa -3'
miRNA:   3'- -GUuUACUCGa--UGCCGCGgaCAGAGGa -5'
30144 5' -53.8 NC_006273.1 + 162471 0.67 0.964998
Target:  5'- gCAGAagGAGCgGCGGcCGCCUccCUCCUc -3'
miRNA:   3'- -GUUUa-CUCGaUGCC-GCGGAcaGAGGA- -5'
30144 5' -53.8 NC_006273.1 + 135198 0.68 0.958063
Target:  5'- ------cGCUGCGGCGC-UGUCUCg- -3'
miRNA:   3'- guuuacuCGAUGCCGCGgACAGAGga -5'
30144 5' -53.8 NC_006273.1 + 208217 0.68 0.954265
Target:  5'- --cAUGcAGCgUGCGGCGCCUcUCUCa- -3'
miRNA:   3'- guuUAC-UCG-AUGCCGCGGAcAGAGga -5'
30144 5' -53.8 NC_006273.1 + 188900 0.68 0.941502
Target:  5'- ----cGAGCaGCaGGCGCCggugcucGUCUCCa -3'
miRNA:   3'- guuuaCUCGaUG-CCGCGGa------CAGAGGa -5'
30144 5' -53.8 NC_006273.1 + 121643 0.68 0.941502
Target:  5'- --cAUGAGC-ACGGCGCCgccgccGUCgCCa -3'
miRNA:   3'- guuUACUCGaUGCCGCGGa-----CAGaGGa -5'
30144 5' -53.8 NC_006273.1 + 130530 0.68 0.936782
Target:  5'- aCAGGUGAGCUACGGCaaguGCCgGaCUggCCa -3'
miRNA:   3'- -GUUUACUCGAUGCCG----CGGaCaGA--GGa -5'
30144 5' -53.8 NC_006273.1 + 220813 0.68 0.936782
Target:  5'- aCAGAUGAGCUuugACGcCGCCUGUUUg-- -3'
miRNA:   3'- -GUUUACUCGA---UGCcGCGGACAGAgga -5'
30144 5' -53.8 NC_006273.1 + 116243 0.69 0.931826
Target:  5'- ----gGAGCaacgucaugcGCGGCGCC-GUCUCCg -3'
miRNA:   3'- guuuaCUCGa---------UGCCGCGGaCAGAGGa -5'
30144 5' -53.8 NC_006273.1 + 22992 0.69 0.931826
Target:  5'- aCGGcgGAcGCaucgACGGCGUgaGUCUCCUc -3'
miRNA:   3'- -GUUuaCU-CGa---UGCCGCGgaCAGAGGA- -5'
30144 5' -53.8 NC_006273.1 + 110253 0.69 0.921202
Target:  5'- gGAcgGAGaCUugGGCGCCgGcCUCUUc -3'
miRNA:   3'- gUUuaCUC-GAugCCGCGGaCaGAGGA- -5'
30144 5' -53.8 NC_006273.1 + 162201 0.69 0.909631
Target:  5'- -cGGUG-GUUGCGGCGCCgcGUCUaCCg -3'
miRNA:   3'- guUUACuCGAUGCCGCGGa-CAGA-GGa -5'
30144 5' -53.8 NC_006273.1 + 95705 0.7 0.903493
Target:  5'- aCGAAcGAGUgACGGCGCCcGUC-CCa -3'
miRNA:   3'- -GUUUaCUCGaUGCCGCGGaCAGaGGa -5'
30144 5' -53.8 NC_006273.1 + 27695 0.71 0.869394
Target:  5'- -----cGGCUACGGCGCCaucGUCUuCCUu -3'
miRNA:   3'- guuuacUCGAUGCCGCGGa--CAGA-GGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.