miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30145 3' -56.8 NC_006273.1 + 179082 0.66 0.933553
Target:  5'- cUCUGCUUUUGCG-GGCaaGcGCGCUUu -3'
miRNA:   3'- aAGACGAAAGCGUgCUGcgC-CGCGAG- -5'
30145 3' -56.8 NC_006273.1 + 137206 0.66 0.933553
Target:  5'- ---aGCUcgUCGC-CaGCGCGaGCGCUCg -3'
miRNA:   3'- aagaCGAa-AGCGuGcUGCGC-CGCGAG- -5'
30145 3' -56.8 NC_006273.1 + 134471 0.66 0.933553
Target:  5'- gUCUGCa---GCGCGGCGCcGC-CUCg -3'
miRNA:   3'- aAGACGaaagCGUGCUGCGcCGcGAG- -5'
30145 3' -56.8 NC_006273.1 + 57466 0.66 0.928516
Target:  5'- gUCUGUUUgucUGUGCGcCGUGGUGCUg -3'
miRNA:   3'- aAGACGAAa--GCGUGCuGCGCCGCGAg -5'
30145 3' -56.8 NC_006273.1 + 47837 0.66 0.928516
Target:  5'- -cCUGUcgUCGCugGGCcuCGGCGC-Cg -3'
miRNA:   3'- aaGACGaaAGCGugCUGc-GCCGCGaG- -5'
30145 3' -56.8 NC_006273.1 + 33343 0.66 0.928516
Target:  5'- -aCUGCggcagccgCGUGCGAuccUGCGGCGCg- -3'
miRNA:   3'- aaGACGaaa-----GCGUGCU---GCGCCGCGag -5'
30145 3' -56.8 NC_006273.1 + 22293 0.66 0.928516
Target:  5'- aUCUGCggcaGCGguaccCGACGCGGCaGCg- -3'
miRNA:   3'- aAGACGaaagCGU-----GCUGCGCCG-CGag -5'
30145 3' -56.8 NC_006273.1 + 168182 0.66 0.923248
Target:  5'- aUCUGCUccaguUUCuugaccaucuGCGCGuACGUGGCGUUg -3'
miRNA:   3'- aAGACGA-----AAG----------CGUGC-UGCGCCGCGAg -5'
30145 3' -56.8 NC_006273.1 + 203553 0.66 0.919977
Target:  5'- -cCUGCUgaCGCACGACGCGuaaaaaGUcaaacaacgccggguGCUCg -3'
miRNA:   3'- aaGACGAaaGCGUGCUGCGC------CG---------------CGAG- -5'
30145 3' -56.8 NC_006273.1 + 196375 0.66 0.91775
Target:  5'- gUCUGUgcgCGCAgGACGgacuguaccUGGCGCUg -3'
miRNA:   3'- aAGACGaaaGCGUgCUGC---------GCCGCGAg -5'
30145 3' -56.8 NC_006273.1 + 140947 0.66 0.91775
Target:  5'- cUCUGUUUagaucUCGCGCguGACGaGGCGCg- -3'
miRNA:   3'- aAGACGAA-----AGCGUG--CUGCgCCGCGag -5'
30145 3' -56.8 NC_006273.1 + 148634 0.66 0.91775
Target:  5'- --aUGCgcgagacggCGUugGACGCGGCgGCUg -3'
miRNA:   3'- aagACGaaa------GCGugCUGCGCCG-CGAg -5'
30145 3' -56.8 NC_006273.1 + 1482 0.66 0.91775
Target:  5'- gUCUGUgcgCGCAgGACGgacuguaccUGGCGCUg -3'
miRNA:   3'- aAGACGaaaGCGUgCUGC---------GCCGCGAg -5'
30145 3' -56.8 NC_006273.1 + 2217 0.66 0.91775
Target:  5'- ---cGCUgg-GCACGACGCGGUGaaCg -3'
miRNA:   3'- aagaCGAaagCGUGCUGCGCCGCgaG- -5'
30145 3' -56.8 NC_006273.1 + 187437 0.66 0.912023
Target:  5'- gUCUGUUaucCGCgACGACGCGuaGCUg -3'
miRNA:   3'- aAGACGAaa-GCG-UGCUGCGCcgCGAg -5'
30145 3' -56.8 NC_006273.1 + 142290 0.66 0.912023
Target:  5'- gUCguguggGCgg-CGUG-GACGCGGUGCUCg -3'
miRNA:   3'- aAGa-----CGaaaGCGUgCUGCGCCGCGAG- -5'
30145 3' -56.8 NC_006273.1 + 176985 0.66 0.912023
Target:  5'- gUCUGCUUggGCACcAUGUG-CGCUCc -3'
miRNA:   3'- aAGACGAAagCGUGcUGCGCcGCGAG- -5'
30145 3' -56.8 NC_006273.1 + 110396 0.66 0.908476
Target:  5'- -cCUGCUg-CGCAauaugacgcugacguUGAUGCGGCGCg- -3'
miRNA:   3'- aaGACGAaaGCGU---------------GCUGCGCCGCGag -5'
30145 3' -56.8 NC_006273.1 + 41363 0.66 0.906067
Target:  5'- ---cGCgcgUUCGCGCGGCcaguugGCGGgGUUCa -3'
miRNA:   3'- aagaCGa--AAGCGUGCUG------CGCCgCGAG- -5'
30145 3' -56.8 NC_006273.1 + 144117 0.66 0.906067
Target:  5'- cUgUGCUUUguuaCG-ACGGCGgGGUGCUCa -3'
miRNA:   3'- aAgACGAAA----GCgUGCUGCgCCGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.