miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30145 5' -60.8 NC_006273.1 + 68211 0.66 0.816944
Target:  5'- --cGGC-CGCuGCGCCCGCcguGGCCa -3'
miRNA:   3'- aguUCGcGCG-CGCGGGCGaguUCGGc -5'
30145 5' -60.8 NC_006273.1 + 39905 0.66 0.816944
Target:  5'- cCGAGCGCGCacccucuaggugGaCGCCCGacauccauucCGGGCCGu -3'
miRNA:   3'- aGUUCGCGCG------------C-GCGGGCga--------GUUCGGC- -5'
30145 5' -60.8 NC_006273.1 + 80429 0.66 0.816944
Target:  5'- gUCGGGCagcucaaCGCGCGCCaGCUCAcGCa- -3'
miRNA:   3'- -AGUUCGc------GCGCGCGGgCGAGUuCGgc -5'
30145 5' -60.8 NC_006273.1 + 173791 0.66 0.816944
Target:  5'- aUCAuggacGCGCGCGCGgUgGC-CAaacGGCCGc -3'
miRNA:   3'- -AGUu----CGCGCGCGCgGgCGaGU---UCGGC- -5'
30145 5' -60.8 NC_006273.1 + 120512 0.66 0.808701
Target:  5'- cUAAGCGCGUGCGCggcgggUgGCUCAA-CCu -3'
miRNA:   3'- aGUUCGCGCGCGCG------GgCGAGUUcGGc -5'
30145 5' -60.8 NC_006273.1 + 182427 0.66 0.808701
Target:  5'- gUUAGGUaGCGUGgGCCUGCU--GGCCu -3'
miRNA:   3'- -AGUUCG-CGCGCgCGGGCGAguUCGGc -5'
30145 5' -60.8 NC_006273.1 + 179793 0.66 0.808701
Target:  5'- gCGAGUucauguugGCGCGCGaCCUGCU--GGCCc -3'
miRNA:   3'- aGUUCG--------CGCGCGC-GGGCGAguUCGGc -5'
30145 5' -60.8 NC_006273.1 + 66752 0.66 0.808701
Target:  5'- aUCGAGaCGCugguGCGCGaCCCGggCA-GCCGc -3'
miRNA:   3'- -AGUUC-GCG----CGCGC-GGGCgaGUuCGGC- -5'
30145 5' -60.8 NC_006273.1 + 158836 0.66 0.808701
Target:  5'- cCAcAGCGCGCcacguccucguGCGCCgCGC-CGAGCgGc -3'
miRNA:   3'- aGU-UCGCGCG-----------CGCGG-GCGaGUUCGgC- -5'
30145 5' -60.8 NC_006273.1 + 106410 0.66 0.807868
Target:  5'- aCAcGGUGC-UGCGCgCGCUCAaaaacacGGCCGa -3'
miRNA:   3'- aGU-UCGCGcGCGCGgGCGAGU-------UCGGC- -5'
30145 5' -60.8 NC_006273.1 + 192157 0.66 0.800315
Target:  5'- cCAAGCGC-CGUagccgGCCCGC-Cu-GCCGa -3'
miRNA:   3'- aGUUCGCGcGCG-----CGGGCGaGuuCGGC- -5'
30145 5' -60.8 NC_006273.1 + 171752 0.66 0.800315
Target:  5'- gUUAuGCGCuacggaGCGCGCCaugaGCUC-GGCCa -3'
miRNA:   3'- -AGUuCGCG------CGCGCGGg---CGAGuUCGGc -5'
30145 5' -60.8 NC_006273.1 + 179172 0.66 0.800315
Target:  5'- uUUAGGCgGCGCaGCGCCagccuuaGCUUucuugacuGGCCGg -3'
miRNA:   3'- -AGUUCG-CGCG-CGCGGg------CGAGu-------UCGGC- -5'
30145 5' -60.8 NC_006273.1 + 98439 0.66 0.800315
Target:  5'- cUCGacGGCGaUGCGCGCCCGa-UAAGCg- -3'
miRNA:   3'- -AGU--UCGC-GCGCGCGGGCgaGUUCGgc -5'
30145 5' -60.8 NC_006273.1 + 88594 0.66 0.800315
Target:  5'- aUggGCGCcgGCaCGCCUGCggucuUCAAGCCc -3'
miRNA:   3'- aGuuCGCG--CGcGCGGGCG-----AGUUCGGc -5'
30145 5' -60.8 NC_006273.1 + 177618 0.66 0.800315
Target:  5'- uUCGcuCGCuCGCGCCCGCUCcuuAGUg- -3'
miRNA:   3'- -AGUucGCGcGCGCGGGCGAGu--UCGgc -5'
30145 5' -60.8 NC_006273.1 + 131423 0.66 0.800315
Target:  5'- gCGAGUuCGCGCGUCUGCUacuGGGCUc -3'
miRNA:   3'- aGUUCGcGCGCGCGGGCGAg--UUCGGc -5'
30145 5' -60.8 NC_006273.1 + 222982 0.66 0.800315
Target:  5'- gCAgcGGCGUGCGCaUCUGCUCGccguagauGGCCu -3'
miRNA:   3'- aGU--UCGCGCGCGcGGGCGAGU--------UCGGc -5'
30145 5' -60.8 NC_006273.1 + 143681 0.66 0.791793
Target:  5'- gCGGGCGgGUGCGUCgGCUagcggucuGGCUGg -3'
miRNA:   3'- aGUUCGCgCGCGCGGgCGAgu------UCGGC- -5'
30145 5' -60.8 NC_006273.1 + 161184 0.66 0.791793
Target:  5'- gUUuuGUGCGaGCGCCCG-UCAAGCuCGu -3'
miRNA:   3'- -AGuuCGCGCgCGCGGGCgAGUUCG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.