miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30146 3' -64.3 NC_006273.1 + 5859 0.66 0.69543
Target:  5'- uGGcGGCccuccguucGGCUCGGGuCGugggUCGUCGCUGa -3'
miRNA:   3'- -CC-CCG---------UCGGGCCC-GCua--AGCGGCGGC- -5'
30146 3' -64.3 NC_006273.1 + 82742 0.66 0.691746
Target:  5'- -aGGCGGCCgagCGGGCGcaauuuguacgCGCgGCCGu -3'
miRNA:   3'- ccCCGUCGG---GCCCGCuaa--------GCGgCGGC- -5'
30146 3' -64.3 NC_006273.1 + 197271 0.66 0.68898
Target:  5'- uGGGCGcgcuggcGCUgGGGCGcgagucggcgccCGCCGCCGa -3'
miRNA:   3'- cCCCGU-------CGGgCCCGCuaa---------GCGGCGGC- -5'
30146 3' -64.3 NC_006273.1 + 2378 0.66 0.68898
Target:  5'- uGGGCGcgcuggcGCUgGGGCGcgagucggcgccCGCCGCCGa -3'
miRNA:   3'- cCCCGU-------CGGgCCCGCuaa---------GCGGCGGC- -5'
30146 3' -64.3 NC_006273.1 + 147578 0.66 0.686209
Target:  5'- gGGGGCGGCggGGGCagcgGGUuaUUGCCgGCCa -3'
miRNA:   3'- -CCCCGUCGggCCCG----CUA--AGCGG-CGGc -5'
30146 3' -64.3 NC_006273.1 + 221293 0.66 0.686209
Target:  5'- -cGGCGGUCCGagccacugaGCGGUUCacagccccgGCCGCCGa -3'
miRNA:   3'- ccCCGUCGGGCc--------CGCUAAG---------CGGCGGC- -5'
30146 3' -64.3 NC_006273.1 + 156878 0.66 0.676951
Target:  5'- --cGguGUCCGGGCGg--CGCCGCa- -3'
miRNA:   3'- cccCguCGGGCCCGCuaaGCGGCGgc -5'
30146 3' -64.3 NC_006273.1 + 144270 0.66 0.676951
Target:  5'- uGGaGGCcuacacGCCCGaGGCGGaUCGCgUGCCu -3'
miRNA:   3'- -CC-CCGu-----CGGGC-CCGCUaAGCG-GCGGc -5'
30146 3' -64.3 NC_006273.1 + 30676 0.66 0.676951
Target:  5'- cGGGCGcGCCUcgGGGC---UCGCCGgCGa -3'
miRNA:   3'- cCCCGU-CGGG--CCCGcuaAGCGGCgGC- -5'
30146 3' -64.3 NC_006273.1 + 14077 0.66 0.671381
Target:  5'- -cGGCGGCCgGGGCuGUgaaccgcucaguggcUCGgaCCGCCGg -3'
miRNA:   3'- ccCCGUCGGgCCCGcUA---------------AGC--GGCGGC- -5'
30146 3' -64.3 NC_006273.1 + 94909 0.66 0.671381
Target:  5'- gGGGGCugggGGCCCGGucaggagcuucgggaGCGGggUCGaCCGCg- -3'
miRNA:   3'- -CCCCG----UCGGGCC---------------CGCUa-AGC-GGCGgc -5'
30146 3' -64.3 NC_006273.1 + 118958 0.66 0.667662
Target:  5'- cGGGaCAGUCCGGcuugggugucCGAguccucgUCGCCGCUGg -3'
miRNA:   3'- cCCC-GUCGGGCCc---------GCUa------AGCGGCGGC- -5'
30146 3' -64.3 NC_006273.1 + 102087 0.66 0.667662
Target:  5'- -cGGCGGCCacacgCGGGUGAcgacgaGCCGCUGc -3'
miRNA:   3'- ccCCGUCGG-----GCCCGCUaag---CGGCGGC- -5'
30146 3' -64.3 NC_006273.1 + 223309 0.66 0.667662
Target:  5'- aGGGCguuucgGGCCCGucGGUGAcagccgCGCUGCCa -3'
miRNA:   3'- cCCCG------UCGGGC--CCGCUaa----GCGGCGGc -5'
30146 3' -64.3 NC_006273.1 + 102474 0.66 0.658349
Target:  5'- -uGGCGGaacguguucaCCaGGGCGcg-CGCCGCCGa -3'
miRNA:   3'- ccCCGUCg---------GG-CCCGCuaaGCGGCGGC- -5'
30146 3' -64.3 NC_006273.1 + 227114 0.66 0.658349
Target:  5'- -cGGCGGCgUGGGUaug-CGCCGCUGc -3'
miRNA:   3'- ccCCGUCGgGCCCGcuaaGCGGCGGC- -5'
30146 3' -64.3 NC_006273.1 + 122112 0.66 0.658349
Target:  5'- -cGGCAGCaCC-GGCGuaUCGCCGCg- -3'
miRNA:   3'- ccCCGUCG-GGcCCGCuaAGCGGCGgc -5'
30146 3' -64.3 NC_006273.1 + 90983 0.66 0.649019
Target:  5'- --cGCGGCgCCGGGCaGAca-GCCGCUGa -3'
miRNA:   3'- cccCGUCG-GGCCCG-CUaagCGGCGGC- -5'
30146 3' -64.3 NC_006273.1 + 41020 0.66 0.649019
Target:  5'- gGGGGguGUgCGGGgaCGGggCGUCGCgGg -3'
miRNA:   3'- -CCCCguCGgGCCC--GCUaaGCGGCGgC- -5'
30146 3' -64.3 NC_006273.1 + 83329 0.66 0.649019
Target:  5'- cGGGUGGaCCCGGcGUGGUgggacccggCGgCGCCGu -3'
miRNA:   3'- cCCCGUC-GGGCC-CGCUAa--------GCgGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.