miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30146 5' -54.3 NC_006273.1 + 133546 0.66 0.981764
Target:  5'- cUUUGGGGAguuuuACGCGCCUGGGUUa -3'
miRNA:   3'- -AAGCUCCUgcuuuUGUGCGGGCUCGA- -5'
30146 5' -54.3 NC_006273.1 + 120308 0.66 0.981764
Target:  5'- -aCGAGGgucccucaccggGCGAGGACgAUGCCUGAGaCa -3'
miRNA:   3'- aaGCUCC------------UGCUUUUG-UGCGGGCUC-Ga -5'
30146 5' -54.3 NC_006273.1 + 41130 0.66 0.979669
Target:  5'- -gCGGGGACGggGAguUGCgggauggCGAGCUg -3'
miRNA:   3'- aaGCUCCUGCuuUUguGCGg------GCUCGA- -5'
30146 5' -54.3 NC_006273.1 + 153363 0.66 0.979669
Target:  5'- -cCGAGGcCGGcgGCACGCgCGuGCc -3'
miRNA:   3'- aaGCUCCuGCUuuUGUGCGgGCuCGa -5'
30146 5' -54.3 NC_006273.1 + 1192 0.66 0.979669
Target:  5'- -gCGGGGACGggGAguUGCgggauggCGAGCUg -3'
miRNA:   3'- aaGCUCCUGCuuUUguGCGg------GCUCGA- -5'
30146 5' -54.3 NC_006273.1 + 160417 0.66 0.979669
Target:  5'- aUUGAGGACGcgGAAAaagaAUGuCCUGGGCUa -3'
miRNA:   3'- aAGCUCCUGC--UUUUg---UGC-GGGCUCGA- -5'
30146 5' -54.3 NC_006273.1 + 90486 0.66 0.979669
Target:  5'- cUUGAgcGGGCGc--GCGCGCuuGAGCg -3'
miRNA:   3'- aAGCU--CCUGCuuuUGUGCGggCUCGa -5'
30146 5' -54.3 NC_006273.1 + 133488 0.66 0.9774
Target:  5'- -gCGcGGACGcuGGCgGCgGCCCGGGCUu -3'
miRNA:   3'- aaGCuCCUGCuuUUG-UG-CGGGCUCGA- -5'
30146 5' -54.3 NC_006273.1 + 204708 0.66 0.9774
Target:  5'- gUCGccGGCGAgccccgAGGCGCGCCCGcuGCg -3'
miRNA:   3'- aAGCucCUGCU------UUUGUGCGGGCu-CGa -5'
30146 5' -54.3 NC_006273.1 + 148748 0.66 0.9774
Target:  5'- gUCGAagGGACGAc-AUGCGCCCaaugcuacgagGAGCUg -3'
miRNA:   3'- aAGCU--CCUGCUuuUGUGCGGG-----------CUCGA- -5'
30146 5' -54.3 NC_006273.1 + 7764 0.66 0.9774
Target:  5'- -gCGAGGAUGgcAugGucuCGCCgGAGCg -3'
miRNA:   3'- aaGCUCCUGCuuUugU---GCGGgCUCGa -5'
30146 5' -54.3 NC_006273.1 + 116420 0.66 0.97495
Target:  5'- -aCGAGGACucGGACACccaagccggacuGuCCCGGGCa -3'
miRNA:   3'- aaGCUCCUGcuUUUGUG------------C-GGGCUCGa -5'
30146 5' -54.3 NC_006273.1 + 24 0.66 0.97495
Target:  5'- gUCGGGGuguguCGggGGCGCGgCgGGGUg -3'
miRNA:   3'- aAGCUCCu----GCuuUUGUGCgGgCUCGa -5'
30146 5' -54.3 NC_006273.1 + 234855 0.66 0.97495
Target:  5'- gUCGGGGuguguCGggGGCGCGgCgGGGUg -3'
miRNA:   3'- aAGCUCCu----GCuuUUGUGCgGgCUCGa -5'
30146 5' -54.3 NC_006273.1 + 194917 0.66 0.97495
Target:  5'- gUCGGGGuguguCGggGGCGCGgCgGGGUg -3'
miRNA:   3'- aAGCUCCu----GCuuUUGUGCgGgCUCGa -5'
30146 5' -54.3 NC_006273.1 + 139839 0.66 0.97495
Target:  5'- gUCucGGACGAGucGACACGC-CGGGUg -3'
miRNA:   3'- aAGcuCCUGCUU--UUGUGCGgGCUCGa -5'
30146 5' -54.3 NC_006273.1 + 174964 0.66 0.97495
Target:  5'- cUCGAGGA-GggGcCGCuGCCCGGGg- -3'
miRNA:   3'- aAGCUCCUgCuuUuGUG-CGGGCUCga -5'
30146 5' -54.3 NC_006273.1 + 192346 0.66 0.97495
Target:  5'- gUUCGAGGuGCGuu-GCGCGgCCGuGGCg -3'
miRNA:   3'- -AAGCUCC-UGCuuuUGUGCgGGC-UCGa -5'
30146 5' -54.3 NC_006273.1 + 80939 0.66 0.974695
Target:  5'- aUCGaAGGAcaggcauCGAuAGCGCgGCCaCGAGCUg -3'
miRNA:   3'- aAGC-UCCU-------GCUuUUGUG-CGG-GCUCGA- -5'
30146 5' -54.3 NC_006273.1 + 15061 0.66 0.972312
Target:  5'- -cCGAGGugGAGAGC-CGUCguugguggUGGGCUg -3'
miRNA:   3'- aaGCUCCugCUUUUGuGCGG--------GCUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.