miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30147 5' -58.4 NC_006273.1 + 76388 0.66 0.887595
Target:  5'- cUgCugUGCGAacUCAUggCCUGCUCCUa -3'
miRNA:   3'- aAgGugACGCU--GGUGuaGGGCGAGGA- -5'
30147 5' -58.4 NC_006273.1 + 45402 0.66 0.887595
Target:  5'- aUCCGCUGCcGCCuGCAgCCCaGuCUCCg -3'
miRNA:   3'- aAGGUGACGcUGG-UGUaGGG-C-GAGGa -5'
30147 5' -58.4 NC_006273.1 + 188685 0.66 0.887595
Target:  5'- gUCgaGCUGCGugCGCAggUCCCGCa--- -3'
miRNA:   3'- aAGg-UGACGCugGUGU--AGGGCGagga -5'
30147 5' -58.4 NC_006273.1 + 183804 0.66 0.887595
Target:  5'- -cCCGCUGCcGCCGCcaCCC-CUCCg -3'
miRNA:   3'- aaGGUGACGcUGGUGuaGGGcGAGGa -5'
30147 5' -58.4 NC_006273.1 + 115453 0.66 0.887595
Target:  5'- -gCCGCUG-GACCGCGUgCCCGUUa-- -3'
miRNA:   3'- aaGGUGACgCUGGUGUA-GGGCGAgga -5'
30147 5' -58.4 NC_006273.1 + 127901 0.66 0.884927
Target:  5'- -cCCACcuuguagaagucgGUGACCACAaagUCCUGCUUCa -3'
miRNA:   3'- aaGGUGa------------CGCUGGUGU---AGGGCGAGGa -5'
30147 5' -58.4 NC_006273.1 + 31188 0.66 0.880863
Target:  5'- cUCCAUUGcCGGCCgGCGUCCagGCUgcCCUg -3'
miRNA:   3'- aAGGUGAC-GCUGG-UGUAGGg-CGA--GGA- -5'
30147 5' -58.4 NC_006273.1 + 114781 0.66 0.873924
Target:  5'- aUCgGC-GCGACCACGUCUgG-UCCUa -3'
miRNA:   3'- aAGgUGaCGCUGGUGUAGGgCgAGGA- -5'
30147 5' -58.4 NC_006273.1 + 38362 0.66 0.866781
Target:  5'- -aCCACcGCGugCGCGUCCgCGUUUg- -3'
miRNA:   3'- aaGGUGaCGCugGUGUAGG-GCGAGga -5'
30147 5' -58.4 NC_006273.1 + 233255 0.66 0.866781
Target:  5'- -aCCACcGCGugCGCGUCCgCGUUUg- -3'
miRNA:   3'- aaGGUGaCGCugGUGUAGG-GCGAGga -5'
30147 5' -58.4 NC_006273.1 + 49963 0.66 0.866781
Target:  5'- -gCCACgUGCagccggguGCCGCAuUCCUGCUCCa -3'
miRNA:   3'- aaGGUG-ACGc-------UGGUGU-AGGGCGAGGa -5'
30147 5' -58.4 NC_006273.1 + 124062 0.66 0.866781
Target:  5'- -gCCGCgcuaUGCGGCCAgGccUCCC-CUCCUa -3'
miRNA:   3'- aaGGUG----ACGCUGGUgU--AGGGcGAGGA- -5'
30147 5' -58.4 NC_006273.1 + 222124 0.66 0.85944
Target:  5'- aUCCGCUGUuguaGACguuuaACcgCCCGUUCCa -3'
miRNA:   3'- aAGGUGACG----CUGg----UGuaGGGCGAGGa -5'
30147 5' -58.4 NC_006273.1 + 94713 0.66 0.858696
Target:  5'- gUUCCGCgguggGCGACCGgGgaUCCCccacccaGCUCCc -3'
miRNA:   3'- -AAGGUGa----CGCUGGUgU--AGGG-------CGAGGa -5'
30147 5' -58.4 NC_006273.1 + 75648 0.66 0.851906
Target:  5'- ---gACUGCGACCAgAgCUgGCUCCUc -3'
miRNA:   3'- aaggUGACGCUGGUgUaGGgCGAGGA- -5'
30147 5' -58.4 NC_006273.1 + 131824 0.66 0.851906
Target:  5'- -cCCACUcgGCGACCAg--CCCGCacggCCUg -3'
miRNA:   3'- aaGGUGA--CGCUGGUguaGGGCGa---GGA- -5'
30147 5' -58.4 NC_006273.1 + 152626 0.66 0.84884
Target:  5'- -cCCGCUGCacGGCCGCGcguacaaauugcgCCCGCUCg- -3'
miRNA:   3'- aaGGUGACG--CUGGUGUa------------GGGCGAGga -5'
30147 5' -58.4 NC_006273.1 + 179396 0.67 0.844185
Target:  5'- aUUCCACUgucagGCGACCugAUUCUaacgGUUCCa -3'
miRNA:   3'- -AAGGUGA-----CGCUGGugUAGGG----CGAGGa -5'
30147 5' -58.4 NC_006273.1 + 230814 0.67 0.844185
Target:  5'- -aCCGCUGCcgucgccACCGCGUuaUCCGUUCCUc -3'
miRNA:   3'- aaGGUGACGc------UGGUGUA--GGGCGAGGA- -5'
30147 5' -58.4 NC_006273.1 + 77642 0.67 0.836283
Target:  5'- aUCCcCUGCGACUGCAUCacgcagaUGCUCa- -3'
miRNA:   3'- aAGGuGACGCUGGUGUAGg------GCGAGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.