miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30148 3' -53.7 NC_006273.1 + 132841 0.66 0.985159
Target:  5'- gGCCGGguaccagcgugcUGUGGGcGCCGGACgUUGUg -3'
miRNA:   3'- aUGGCU------------AUACCCaCGGCUUGaGACGu -5'
30148 3' -53.7 NC_006273.1 + 31838 0.66 0.984984
Target:  5'- cGCCa--GUGGGUGCCcacgGAcuuggaccaucucACUCUGCAu -3'
miRNA:   3'- aUGGcuaUACCCACGG----CU-------------UGAGACGU- -5'
30148 3' -53.7 NC_006273.1 + 193791 0.66 0.983341
Target:  5'- aACCGGUGUGGaaGCCGAggagGCUaugGCGc -3'
miRNA:   3'- aUGGCUAUACCcaCGGCU----UGAga-CGU- -5'
30148 3' -53.7 NC_006273.1 + 61762 0.66 0.981361
Target:  5'- cGCCuucGUGGGUgcguuGCCGAGCUCggGCu -3'
miRNA:   3'- aUGGcuaUACCCA-----CGGCUUGAGa-CGu -5'
30148 3' -53.7 NC_006273.1 + 187193 0.66 0.979209
Target:  5'- gGCCGGcccUcgGGGUGCgGGugGCgggCUGCGu -3'
miRNA:   3'- aUGGCU---AuaCCCACGgCU--UGa--GACGU- -5'
30148 3' -53.7 NC_006273.1 + 136791 0.66 0.976878
Target:  5'- --aCGAguggaaGGGUGCCGGugUCUcGCGu -3'
miRNA:   3'- augGCUaua---CCCACGGCUugAGA-CGU- -5'
30148 3' -53.7 NC_006273.1 + 233703 0.67 0.97165
Target:  5'- cGCgGGggacgGGGUaGCCGAGCgCUGCGc -3'
miRNA:   3'- aUGgCUaua--CCCA-CGGCUUGaGACGU- -5'
30148 3' -53.7 NC_006273.1 + 44796 0.67 0.968739
Target:  5'- gGCCGA--UGGGcGCCGGcggacgugACUCgGCAg -3'
miRNA:   3'- aUGGCUauACCCaCGGCU--------UGAGaCGU- -5'
30148 3' -53.7 NC_006273.1 + 111536 0.67 0.965298
Target:  5'- aUGCCGuccggGUGUGGGgacgacGCUGAuucgacggggaacGCUCUGCGg -3'
miRNA:   3'- -AUGGC-----UAUACCCa-----CGGCU-------------UGAGACGU- -5'
30148 3' -53.7 NC_006273.1 + 55778 0.68 0.94973
Target:  5'- cGCCGAUgaguacggguagcgGUGGGcgGCCGAugGCUUcGCAa -3'
miRNA:   3'- aUGGCUA--------------UACCCa-CGGCU--UGAGaCGU- -5'
30148 3' -53.7 NC_006273.1 + 234008 0.7 0.891449
Target:  5'- gGCgUGGUGUGGGUGCUGuuuGugUCUGUg -3'
miRNA:   3'- aUG-GCUAUACCCACGGC---UugAGACGu -5'
30148 3' -53.7 NC_006273.1 + 215026 0.71 0.830941
Target:  5'- gACCGucgucugagcaGUGUGGGcgcUGCCGGGCUCggaagGCAu -3'
miRNA:   3'- aUGGC-----------UAUACCC---ACGGCUUGAGa----CGU- -5'
30148 3' -53.7 NC_006273.1 + 145553 1.07 0.008481
Target:  5'- cUACCGAUAUGGGUGCCGAACUCUGCAa -3'
miRNA:   3'- -AUGGCUAUACCCACGGCUUGAGACGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.