miRNA display CGI


Results 1 - 20 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30149 5' -53.5 NC_006273.1 + 135495 0.66 0.986979
Target:  5'- -uACGAagcucucuauccGGUGGCGcGUAGCCACCu -3'
miRNA:   3'- uuUGCUguca--------UCAUCGC-CGUCGGUGG- -5'
30149 5' -53.5 NC_006273.1 + 232956 0.66 0.986821
Target:  5'- -cGCGGucCAGcucgGGCaGCAGCCGCCg -3'
miRNA:   3'- uuUGCU--GUCaucaUCGcCGUCGGUGG- -5'
30149 5' -53.5 NC_006273.1 + 117163 0.66 0.986821
Target:  5'- gAGGCGGC-GUGcGUuauuaaAGCGGCGuCCGCCg -3'
miRNA:   3'- -UUUGCUGuCAU-CA------UCGCCGUcGGUGG- -5'
30149 5' -53.5 NC_006273.1 + 213291 0.66 0.986821
Target:  5'- -cACGAguGUGGUcaaaccguGGCGGCAcCCugUa -3'
miRNA:   3'- uuUGCUguCAUCA--------UCGCCGUcGGugG- -5'
30149 5' -53.5 NC_006273.1 + 187333 0.66 0.986821
Target:  5'- --uCGACGucGGUcAGCGGCGccGUCACCg -3'
miRNA:   3'- uuuGCUGUcaUCA-UCGCCGU--CGGUGG- -5'
30149 5' -53.5 NC_006273.1 + 129832 0.66 0.986821
Target:  5'- -uGCGACGGUGa-AGUGGagGGCCACg -3'
miRNA:   3'- uuUGCUGUCAUcaUCGCCg-UCGGUGg -5'
30149 5' -53.5 NC_006273.1 + 68779 0.66 0.986821
Target:  5'- ---aGGCGGUGGaAGCggucuGGCAGCgACUg -3'
miRNA:   3'- uuugCUGUCAUCaUCG-----CCGUCGgUGG- -5'
30149 5' -53.5 NC_006273.1 + 38063 0.66 0.986821
Target:  5'- -cGCGGucCAGcucgGGCaGCAGCCGCCg -3'
miRNA:   3'- uuUGCU--GUCaucaUCGcCGUCGGUGG- -5'
30149 5' -53.5 NC_006273.1 + 120771 0.66 0.986821
Target:  5'- uAGCGGCGGUGGgcaCaGCGGCUACg -3'
miRNA:   3'- uUUGCUGUCAUCaucGcCGUCGGUGg -5'
30149 5' -53.5 NC_006273.1 + 133054 0.66 0.986821
Target:  5'- --uUGACGGU-GUGGUGGcCAGCgcuuauCACCg -3'
miRNA:   3'- uuuGCUGUCAuCAUCGCC-GUCG------GUGG- -5'
30149 5' -53.5 NC_006273.1 + 122222 0.66 0.986821
Target:  5'- uGACGAUcaaaagugcccgGGUGaUAGUGGCGaCCACCg -3'
miRNA:   3'- uUUGCUG------------UCAUcAUCGCCGUcGGUGG- -5'
30149 5' -53.5 NC_006273.1 + 133478 0.66 0.986661
Target:  5'- cGGCGuGCAGgcGcggacgcUGGCGGCGGCCcgggcuuuguuaGCCg -3'
miRNA:   3'- uUUGC-UGUCauC-------AUCGCCGUCGG------------UGG- -5'
30149 5' -53.5 NC_006273.1 + 122961 0.66 0.985159
Target:  5'- cGGACGACacGGUGGUuGUaGCAGCguCCg -3'
miRNA:   3'- -UUUGCUG--UCAUCAuCGcCGUCGguGG- -5'
30149 5' -53.5 NC_006273.1 + 152088 0.66 0.985159
Target:  5'- -cGCGcgGGUAGUAGaCGGUuuuGGuCCACCa -3'
miRNA:   3'- uuUGCugUCAUCAUC-GCCG---UC-GGUGG- -5'
30149 5' -53.5 NC_006273.1 + 195755 0.66 0.985159
Target:  5'- uGGACGuCGGaGGUGucCGGCGGCCAUg -3'
miRNA:   3'- -UUUGCuGUCaUCAUc-GCCGUCGGUGg -5'
30149 5' -53.5 NC_006273.1 + 863 0.66 0.985159
Target:  5'- uGGACGuCGGaGGUGucCGGCGGCCAUg -3'
miRNA:   3'- -UUUGCuGUCaUCAUc-GCCGUCGGUGg -5'
30149 5' -53.5 NC_006273.1 + 197345 0.66 0.98463
Target:  5'- -cGCGAgCAGUGGgAGCGGCcGCgcugggacgcgcugCACCu -3'
miRNA:   3'- uuUGCU-GUCAUCaUCGCCGuCG--------------GUGG- -5'
30149 5' -53.5 NC_006273.1 + 2452 0.66 0.98463
Target:  5'- -cGCGAgCAGUGGgAGCGGCcGCgcugggacgcgcugCACCu -3'
miRNA:   3'- uuUGCU-GUCAUCaUCGCCGuCG--------------GUGG- -5'
30149 5' -53.5 NC_006273.1 + 72506 0.66 0.984087
Target:  5'- uGAUGAUGGUGGUGGUGGUuguuggaggaagaagAGaCCGCg -3'
miRNA:   3'- uUUGCUGUCAUCAUCGCCG---------------UC-GGUGg -5'
30149 5' -53.5 NC_006273.1 + 178806 0.66 0.983341
Target:  5'- uGACGuccaaaGGUGGaucgGGCGGCGGCgGCg -3'
miRNA:   3'- uUUGCug----UCAUCa---UCGCCGUCGgUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.