miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30150 3' -53 NC_006273.1 + 51682 0.66 0.991236
Target:  5'- gAGC-CCcgGUGGCCUGgAUGUgggccaACGAa -3'
miRNA:   3'- aUUGuGGuaCACCGGACaUGCG------UGCU- -5'
30150 3' -53 NC_006273.1 + 142435 0.66 0.991236
Target:  5'- -cGCGCgCGUGUGcgcgcgugcGCgUGUGCGCACa- -3'
miRNA:   3'- auUGUG-GUACAC---------CGgACAUGCGUGcu -5'
30150 3' -53 NC_006273.1 + 177152 0.66 0.991236
Target:  5'- gUGACGCCgucaGUGUGGgCUu--CGCGCGGc -3'
miRNA:   3'- -AUUGUGG----UACACCgGAcauGCGUGCU- -5'
30150 3' -53 NC_006273.1 + 130087 0.66 0.990015
Target:  5'- gAACGCUAcGcuaUGGCCUGccugcCGCGCGAc -3'
miRNA:   3'- aUUGUGGUaC---ACCGGACau---GCGUGCU- -5'
30150 3' -53 NC_006273.1 + 95237 0.66 0.988664
Target:  5'- --cCACCAggcUGUGGCgUGUGUGCugGc -3'
miRNA:   3'- auuGUGGU---ACACCGgACAUGCGugCu -5'
30150 3' -53 NC_006273.1 + 104649 0.66 0.988664
Target:  5'- -cGCGCC-UGUGGCCgauUACGUGCu- -3'
miRNA:   3'- auUGUGGuACACCGGac-AUGCGUGcu -5'
30150 3' -53 NC_006273.1 + 148653 0.66 0.988664
Target:  5'- cUGGCGCCGgagGccGGCCUGgaggucUGCGCGCa- -3'
miRNA:   3'- -AUUGUGGUa--Ca-CCGGAC------AUGCGUGcu -5'
30150 3' -53 NC_006273.1 + 61609 0.66 0.987176
Target:  5'- -cGCGuCCAUGaUGGCgaG-GCGCACGGu -3'
miRNA:   3'- auUGU-GGUAC-ACCGgaCaUGCGUGCU- -5'
30150 3' -53 NC_006273.1 + 73366 0.66 0.987176
Target:  5'- cAGCACCAgcgGGCCcagaGUcgcaaaGCGCGCGGg -3'
miRNA:   3'- aUUGUGGUacaCCGGa---CA------UGCGUGCU- -5'
30150 3' -53 NC_006273.1 + 198981 0.66 0.987176
Target:  5'- gGGCACCGUGUacgcGGCgCUGgugGgGCAgGAu -3'
miRNA:   3'- aUUGUGGUACA----CCG-GACa--UgCGUgCU- -5'
30150 3' -53 NC_006273.1 + 80141 0.66 0.983753
Target:  5'- cAGCGCCAggcuagGUGGCUUG-ACGUAUuuGAg -3'
miRNA:   3'- aUUGUGGUa-----CACCGGACaUGCGUG--CU- -5'
30150 3' -53 NC_006273.1 + 155680 0.66 0.983753
Target:  5'- --cCACCGUGgcuacGGCCUcacuucGCGCACGGc -3'
miRNA:   3'- auuGUGGUACa----CCGGAca----UGCGUGCU- -5'
30150 3' -53 NC_006273.1 + 198493 0.67 0.981802
Target:  5'- cGGCGCCGUGUucGCCUacgACGCGCa- -3'
miRNA:   3'- aUUGUGGUACAc-CGGAca-UGCGUGcu -5'
30150 3' -53 NC_006273.1 + 53774 0.67 0.979679
Target:  5'- -uGCACCGUcugGGCCgggcaauccuggUGuUGCGCGCGAa -3'
miRNA:   3'- auUGUGGUAca-CCGG------------AC-AUGCGUGCU- -5'
30150 3' -53 NC_006273.1 + 142120 0.67 0.979679
Target:  5'- ---gGCCAUGUGGUCguucgaGUACGauCGCGAc -3'
miRNA:   3'- auugUGGUACACCGGa-----CAUGC--GUGCU- -5'
30150 3' -53 NC_006273.1 + 93824 0.67 0.979008
Target:  5'- gGGCguuGCCAcgcggauuaugggaUGUGGCCUcgaGUGCGCAUGc -3'
miRNA:   3'- aUUG---UGGU--------------ACACCGGA---CAUGCGUGCu -5'
30150 3' -53 NC_006273.1 + 122211 0.67 0.977378
Target:  5'- cGACuCCAUGcuGCCUGcGCGUACGGg -3'
miRNA:   3'- aUUGuGGUACacCGGACaUGCGUGCU- -5'
30150 3' -53 NC_006273.1 + 36758 0.67 0.977378
Target:  5'- gGGCuCCGgcggGUGGCCUGagcACGC-CGAg -3'
miRNA:   3'- aUUGuGGUa---CACCGGACa--UGCGuGCU- -5'
30150 3' -53 NC_006273.1 + 196357 0.67 0.97221
Target:  5'- aGGCcgGCCAUcccgagGGUCUGUGCGCGCa- -3'
miRNA:   3'- aUUG--UGGUAca----CCGGACAUGCGUGcu -5'
30150 3' -53 NC_006273.1 + 1464 0.67 0.97221
Target:  5'- aGGCcgGCCAUcccgagGGUCUGUGCGCGCa- -3'
miRNA:   3'- aUUG--UGGUAca----CCGGACAUGCGUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.