miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30150 5' -57.7 NC_006273.1 + 68055 0.66 0.918013
Target:  5'- cGGCC--AGCGCc--GCCGUGGCcGCCg -3'
miRNA:   3'- -UCGGcaUCGUGuccCGGUACCGaUGG- -5'
30150 5' -57.7 NC_006273.1 + 106209 0.66 0.918013
Target:  5'- uGCUGUuccacGUACAGGuGCCGcgGGUgGCCa -3'
miRNA:   3'- uCGGCAu----CGUGUCC-CGGUa-CCGaUGG- -5'
30150 5' -57.7 NC_006273.1 + 192669 0.66 0.91237
Target:  5'- cGCCGUguGGCGCGGccuGGCC--GGCUGuCUg -3'
miRNA:   3'- uCGGCA--UCGUGUC---CCGGuaCCGAU-GG- -5'
30150 5' -57.7 NC_006273.1 + 97224 0.66 0.91237
Target:  5'- cGCCugccCGCA-GGCCGUGGCcGCCg -3'
miRNA:   3'- uCGGcaucGUGUcCCGGUACCGaUGG- -5'
30150 5' -57.7 NC_006273.1 + 233437 0.66 0.91237
Target:  5'- -aCUGUA-CACGGcGGCCGUGGCcuCCg -3'
miRNA:   3'- ucGGCAUcGUGUC-CCGGUACCGauGG- -5'
30150 5' -57.7 NC_006273.1 + 84828 0.66 0.91237
Target:  5'- aAGCCGUGG-ACGGuuGGCCcgugGGCcuggGCCu -3'
miRNA:   3'- -UCGGCAUCgUGUC--CCGGua--CCGa---UGG- -5'
30150 5' -57.7 NC_006273.1 + 48818 0.66 0.91237
Target:  5'- gGGCUGUcaCACAGGGCCugaaGCU-CCu -3'
miRNA:   3'- -UCGGCAucGUGUCCCGGuac-CGAuGG- -5'
30150 5' -57.7 NC_006273.1 + 142805 0.66 0.906505
Target:  5'- cGCCGUcGCugGuGGGCacgGGCgugcACCg -3'
miRNA:   3'- uCGGCAuCGugU-CCCGguaCCGa---UGG- -5'
30150 5' -57.7 NC_006273.1 + 173190 0.66 0.900419
Target:  5'- cGGCCacGGCGCgacaauugacguAGGGCCgcgccuccGUGGCaGCCg -3'
miRNA:   3'- -UCGGcaUCGUG------------UCCCGG--------UACCGaUGG- -5'
30150 5' -57.7 NC_006273.1 + 233299 0.66 0.899798
Target:  5'- gAGCCGUAGCAUGuGGGUgcgaugcgguggaUGUGGUggGCUg -3'
miRNA:   3'- -UCGGCAUCGUGU-CCCG-------------GUACCGa-UGG- -5'
30150 5' -57.7 NC_006273.1 + 144207 0.66 0.899798
Target:  5'- gAGCgGUgcgacgaccGGCACGGcGGCUcggacgacuacguGUGGCUcaGCCg -3'
miRNA:   3'- -UCGgCA---------UCGUGUC-CCGG-------------UACCGA--UGG- -5'
30150 5' -57.7 NC_006273.1 + 117828 0.66 0.894114
Target:  5'- gGGCCGcuacGGCGCcGGGauaCAUGacgggcGCUGCCg -3'
miRNA:   3'- -UCGGCa---UCGUGuCCCg--GUAC------CGAUGG- -5'
30150 5' -57.7 NC_006273.1 + 137612 0.66 0.894114
Target:  5'- gAGCCGgaaacaccgcgAGUAUcGGGCCGUcGCUuGCCg -3'
miRNA:   3'- -UCGGCa----------UCGUGuCCCGGUAcCGA-UGG- -5'
30150 5' -57.7 NC_006273.1 + 130062 0.66 0.894114
Target:  5'- cGGCgGUGGCGCcucgggaaccgAGGaacgcuacGCUAUGGcCUGCCu -3'
miRNA:   3'- -UCGgCAUCGUG-----------UCC--------CGGUACC-GAUGG- -5'
30150 5' -57.7 NC_006273.1 + 118727 0.66 0.890228
Target:  5'- gGGUCGUGGCGCGGGcacggaccgcaacguGCUgcuAUGuCUGCCg -3'
miRNA:   3'- -UCGGCAUCGUGUCC---------------CGG---UACcGAUGG- -5'
30150 5' -57.7 NC_006273.1 + 61575 0.66 0.887595
Target:  5'- cGGCCG-GGuCGCGcGGCCGuuUGGCcACCg -3'
miRNA:   3'- -UCGGCaUC-GUGUcCCGGU--ACCGaUGG- -5'
30150 5' -57.7 NC_006273.1 + 81747 0.66 0.887595
Target:  5'- gAGCCcu-GCGCGGaGCCG-GGCUGCg -3'
miRNA:   3'- -UCGGcauCGUGUCcCGGUaCCGAUGg -5'
30150 5' -57.7 NC_006273.1 + 929 0.66 0.887595
Target:  5'- cGGUCGcGGcCGCGGGGCCGgagGGCcuUCg -3'
miRNA:   3'- -UCGGCaUC-GUGUCCCGGUa--CCGauGG- -5'
30150 5' -57.7 NC_006273.1 + 168606 0.66 0.887595
Target:  5'- aGGCCaGUgucAGCGCcGaGCCGcGGCUGCCc -3'
miRNA:   3'- -UCGG-CA---UCGUGuCcCGGUaCCGAUGG- -5'
30150 5' -57.7 NC_006273.1 + 189880 0.66 0.887595
Target:  5'- cGCaguaGUGGCGCAgcuGGGCCGUGaaaACCa -3'
miRNA:   3'- uCGg---CAUCGUGU---CCCGGUACcgaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.