miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30152 3' -53.8 NC_006273.1 + 106072 0.66 0.985312
Target:  5'- cACCgUCACGCCGGccGCGGuaccCGGGa -3'
miRNA:   3'- -UGGaAGUGCGGCCa-CGUCuaa-GUCUg -5'
30152 3' -53.8 NC_006273.1 + 204198 0.66 0.984791
Target:  5'- aGCCUggACGCCGGccgGCAauggagcacgcuccGGUUaCAGGCa -3'
miRNA:   3'- -UGGAagUGCGGCCa--CGU--------------CUAA-GUCUG- -5'
30152 3' -53.8 NC_006273.1 + 188604 0.66 0.983519
Target:  5'- -gCUUaACGCCGGUuugcgcgcgcgGCAGAgUCGGAUg -3'
miRNA:   3'- ugGAAgUGCGGCCA-----------CGUCUaAGUCUG- -5'
30152 3' -53.8 NC_006273.1 + 63332 0.66 0.983519
Target:  5'- cAUCUUCGCGCaguuGGUGguGGUaacugaguucUCGGAg -3'
miRNA:   3'- -UGGAAGUGCGg---CCACguCUA----------AGUCUg -5'
30152 3' -53.8 NC_006273.1 + 80750 0.66 0.983519
Target:  5'- cGCCgucucgUCGuugcCGCCGGUGCucccGAUUaCAGAUc -3'
miRNA:   3'- -UGGa-----AGU----GCGGCCACGu---CUAA-GUCUG- -5'
30152 3' -53.8 NC_006273.1 + 113640 0.66 0.981565
Target:  5'- ----aCGCGUCGGgcaaGCAGAUguggCAGGCg -3'
miRNA:   3'- uggaaGUGCGGCCa---CGUCUAa---GUCUG- -5'
30152 3' -53.8 NC_006273.1 + 133464 0.66 0.981565
Target:  5'- uAUCgcagUCACGgCGGcgUGCAGGcgCGGACg -3'
miRNA:   3'- -UGGa---AGUGCgGCC--ACGUCUaaGUCUG- -5'
30152 3' -53.8 NC_006273.1 + 43149 0.66 0.977142
Target:  5'- cACCg-UACGCCGGUGCAGGcguuuUUCGc-- -3'
miRNA:   3'- -UGGaaGUGCGGCCACGUCU-----AAGUcug -5'
30152 3' -53.8 NC_006273.1 + 162346 0.66 0.977142
Target:  5'- uCCUcgUC-UGCCGGUGguGGUggAGGCg -3'
miRNA:   3'- uGGA--AGuGCGGCCACguCUAagUCUG- -5'
30152 3' -53.8 NC_006273.1 + 197148 0.66 0.977142
Target:  5'- uGCCgcgcgcCAUGCUGGUGguGGUgcuGGACg -3'
miRNA:   3'- -UGGaa----GUGCGGCCACguCUAag-UCUG- -5'
30152 3' -53.8 NC_006273.1 + 2255 0.66 0.977142
Target:  5'- uGCCgcgcgcCAUGCUGGUGguGGUgcuGGACg -3'
miRNA:   3'- -UGGaa----GUGCGGCCACguCUAag-UCUG- -5'
30152 3' -53.8 NC_006273.1 + 160793 0.67 0.969112
Target:  5'- uACCUgggaCGCGCaguuGGgcgGCGGAUUgGGGCg -3'
miRNA:   3'- -UGGAa---GUGCGg---CCa--CGUCUAAgUCUG- -5'
30152 3' -53.8 NC_006273.1 + 198942 0.67 0.966037
Target:  5'- gACCUUCuuuCaCCGcGUGCGGAUUCucugcGGCg -3'
miRNA:   3'- -UGGAAGu--GcGGC-CACGUCUAAGu----CUG- -5'
30152 3' -53.8 NC_006273.1 + 60195 0.67 0.966037
Target:  5'- uCCUggUCGCGCCGGc-CGGAUuaaaggugcUCAGACc -3'
miRNA:   3'- uGGA--AGUGCGGCCacGUCUA---------AGUCUG- -5'
30152 3' -53.8 NC_006273.1 + 54508 0.67 0.966037
Target:  5'- cGCCgaUCAUGCCGaUGCAGAcgUUCAugucGACg -3'
miRNA:   3'- -UGGa-AGUGCGGCcACGUCU--AAGU----CUG- -5'
30152 3' -53.8 NC_006273.1 + 176581 0.67 0.962752
Target:  5'- ----aCAUGCCGGUGCAGcggCuGACg -3'
miRNA:   3'- uggaaGUGCGGCCACGUCuaaGuCUG- -5'
30152 3' -53.8 NC_006273.1 + 175416 0.68 0.951588
Target:  5'- cACCgugUCGCggcacaguGCCGGUuuggGCAGuUUCAGGCu -3'
miRNA:   3'- -UGGa--AGUG--------CGGCCA----CGUCuAAGUCUG- -5'
30152 3' -53.8 NC_006273.1 + 235385 0.68 0.947417
Target:  5'- gACCgc--CGCCGGUGCGGGacaGGGCu -3'
miRNA:   3'- -UGGaaguGCGGCCACGUCUaagUCUG- -5'
30152 3' -53.8 NC_006273.1 + 554 0.68 0.947417
Target:  5'- gACCgc--CGCCGGUGCGGGacaGGGCu -3'
miRNA:   3'- -UGGaaguGCGGCCACGUCUaagUCUG- -5'
30152 3' -53.8 NC_006273.1 + 47850 0.68 0.947417
Target:  5'- gGCCUcgGCGCCGuacgGCGGGagUCGGACa -3'
miRNA:   3'- -UGGAagUGCGGCca--CGUCUa-AGUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.