miRNA display CGI


Results 1 - 20 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30152 5' -63.6 NC_006273.1 + 141745 0.66 0.685128
Target:  5'- cAGGgCGCGCCGGCGCca---GUGGAu -3'
miRNA:   3'- cUCCgGCGUGGCCGUGacccgCACCU- -5'
30152 5' -63.6 NC_006273.1 + 199503 0.66 0.684186
Target:  5'- -uGGCCGCcgcuGCaCGGCaucauGCUGGGCGacacucaguacuuUGGGg -3'
miRNA:   3'- cuCCGGCG----UG-GCCG-----UGACCCGC-------------ACCU- -5'
30152 5' -63.6 NC_006273.1 + 4588 0.66 0.675696
Target:  5'- -cGGCagcgGUGgUGGCGCUGGGgGUGGc -3'
miRNA:   3'- cuCCGg---CGUgGCCGUGACCCgCACCu -5'
30152 5' -63.6 NC_006273.1 + 99569 0.66 0.675696
Target:  5'- -cGGaCUGCACCGGgAUgaUGGGCugcuuGUGGGg -3'
miRNA:   3'- cuCC-GGCGUGGCCgUG--ACCCG-----CACCU- -5'
30152 5' -63.6 NC_006273.1 + 65573 0.66 0.675696
Target:  5'- aGGGGCCcUGCCGGCcCUGGGCc---- -3'
miRNA:   3'- -CUCCGGcGUGGCCGuGACCCGcaccu -5'
30152 5' -63.6 NC_006273.1 + 149448 0.66 0.674751
Target:  5'- -cGGCgGCGCCGGUgguaguccgcuccACgGGGUgGUGGGu -3'
miRNA:   3'- cuCCGgCGUGGCCG-------------UGaCCCG-CACCU- -5'
30152 5' -63.6 NC_006273.1 + 220342 0.66 0.656747
Target:  5'- aAGGCaGC-UCGGCACgccccgGGGCGUGcGGg -3'
miRNA:   3'- cUCCGgCGuGGCCGUGa-----CCCGCAC-CU- -5'
30152 5' -63.6 NC_006273.1 + 205289 0.66 0.656747
Target:  5'- -cGGCCGaguUCGGC-CUGGGCugucUGGAa -3'
miRNA:   3'- cuCCGGCgu-GGCCGuGACCCGc---ACCU- -5'
30152 5' -63.6 NC_006273.1 + 95260 0.66 0.656747
Target:  5'- -uGGCCgauGCGgCGGCGaggUUGGGUGUGGc -3'
miRNA:   3'- cuCCGG---CGUgGCCGU---GACCCGCACCu -5'
30152 5' -63.6 NC_006273.1 + 33278 0.66 0.656747
Target:  5'- cGGGGCCuuGCGgCGGCAgCgguuGGCGUGGu -3'
miRNA:   3'- -CUCCGG--CGUgGCCGU-Gac--CCGCACCu -5'
30152 5' -63.6 NC_006273.1 + 139927 0.66 0.656747
Target:  5'- gGAGGCCGUAaauaUGGCGCUGGuggccuGCGaGGc -3'
miRNA:   3'- -CUCCGGCGUg---GCCGUGACC------CGCaCCu -5'
30152 5' -63.6 NC_006273.1 + 145316 0.66 0.647243
Target:  5'- uGGGCUGCGCCgcggGGCugUGcgaGGCcuGUGGGg -3'
miRNA:   3'- cUCCGGCGUGG----CCGugAC---CCG--CACCU- -5'
30152 5' -63.6 NC_006273.1 + 162991 0.66 0.647243
Target:  5'- gGAGGCuCGaCGgCGGCAgCUGcGGCGguaGGAc -3'
miRNA:   3'- -CUCCG-GC-GUgGCCGU-GAC-CCGCa--CCU- -5'
30152 5' -63.6 NC_006273.1 + 37132 0.66 0.637728
Target:  5'- -cGGCCGCGgaGGUGCUGGcggcCGUGGc -3'
miRNA:   3'- cuCCGGCGUggCCGUGACCc---GCACCu -5'
30152 5' -63.6 NC_006273.1 + 167152 0.66 0.637728
Target:  5'- cGGGCCGCuggaagUCGGCggGCggGGGCGUGa- -3'
miRNA:   3'- cUCCGGCGu-----GGCCG--UGa-CCCGCACcu -5'
30152 5' -63.6 NC_006273.1 + 64782 0.66 0.637728
Target:  5'- cGGGCgGCuGCCGGUcuacagACUGGGCGacGAa -3'
miRNA:   3'- cUCCGgCG-UGGCCG------UGACCCGCacCU- -5'
30152 5' -63.6 NC_006273.1 + 87975 0.66 0.637728
Target:  5'- gGAcGCCGCGCCGacgcCACUGGGCGcGa- -3'
miRNA:   3'- -CUcCGGCGUGGCc---GUGACCCGCaCcu -5'
30152 5' -63.6 NC_006273.1 + 167018 0.66 0.634873
Target:  5'- cGuuGCCGCACgaGGCGCUGauuugcagcugcacGGCcGUGGAg -3'
miRNA:   3'- -CucCGGCGUGg-CCGUGAC--------------CCG-CACCU- -5'
30152 5' -63.6 NC_006273.1 + 177255 0.67 0.62821
Target:  5'- gGAGGCCGCugCGcGUGCccgUGGugaauuacGCGUGGu -3'
miRNA:   3'- -CUCCGGCGugGC-CGUG---ACC--------CGCACCu -5'
30152 5' -63.6 NC_006273.1 + 101161 0.67 0.62821
Target:  5'- aAGGCCu--CgGGCAC-GGGCGUGGc -3'
miRNA:   3'- cUCCGGcguGgCCGUGaCCCGCACCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.