miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30153 3' -52.3 NC_006273.1 + 17 0.66 0.995315
Target:  5'- gGCGGCgGUCG-GGGuguGUCGGgGGCgcGGCg -3'
miRNA:   3'- -UGUUG-CAGCaCCUu--CAGUCgUCG--UCG- -5'
30153 3' -52.3 NC_006273.1 + 42218 0.66 0.995315
Target:  5'- -gAACGggcagCGUGGGcuUCGGCGGcCGGUg -3'
miRNA:   3'- ugUUGCa----GCACCUucAGUCGUC-GUCG- -5'
30153 3' -52.3 NC_006273.1 + 167190 0.66 0.995315
Target:  5'- cGCAGCGgcCGcGGAGGcCGGCguaaacagcgucAGCGGCc -3'
miRNA:   3'- -UGUUGCa-GCaCCUUCaGUCG------------UCGUCG- -5'
30153 3' -52.3 NC_006273.1 + 33629 0.66 0.995315
Target:  5'- uCGACGUUGcacgGGGuucugagcgAGUCccuugcGCAGCAGCg -3'
miRNA:   3'- uGUUGCAGCa---CCU---------UCAGu-----CGUCGUCG- -5'
30153 3' -52.3 NC_006273.1 + 234848 0.66 0.995315
Target:  5'- gGCGGCgGUCG-GGGuguGUCGGgGGCgcGGCg -3'
miRNA:   3'- -UGUUG-CAGCaCCUu--CAGUCgUCG--UCG- -5'
30153 3' -52.3 NC_006273.1 + 194910 0.66 0.995315
Target:  5'- gGCGGCgGUCG-GGGuguGUCGGgGGCgcGGCg -3'
miRNA:   3'- -UGUUG-CAGCaCCUu--CAGUCgUCG--UCG- -5'
30153 3' -52.3 NC_006273.1 + 196879 0.66 0.995315
Target:  5'- gACGACGUCGccGccAG-CGGCgAGCGGCa -3'
miRNA:   3'- -UGUUGCAGCa-CcuUCaGUCG-UCGUCG- -5'
30153 3' -52.3 NC_006273.1 + 68012 0.66 0.994571
Target:  5'- gGCGGCGUCauggGUGGcgGAGgacugcCGGCAGguGUg -3'
miRNA:   3'- -UGUUGCAG----CACC--UUCa-----GUCGUCguCG- -5'
30153 3' -52.3 NC_006273.1 + 119247 0.66 0.994571
Target:  5'- cACGGCGgaaaaaGUGGAug-CGGCcuAGCGGCu -3'
miRNA:   3'- -UGUUGCag----CACCUucaGUCG--UCGUCG- -5'
30153 3' -52.3 NC_006273.1 + 233018 0.66 0.994571
Target:  5'- -aGACGUCGUGGcgaggggauGGGuuuauuggauaUCGGUgaAGCAGCg -3'
miRNA:   3'- ugUUGCAGCACC---------UUC-----------AGUCG--UCGUCG- -5'
30153 3' -52.3 NC_006273.1 + 167049 0.66 0.994571
Target:  5'- cACGGC--CGUGG-AGUCGuGCAGCcGCa -3'
miRNA:   3'- -UGUUGcaGCACCuUCAGU-CGUCGuCG- -5'
30153 3' -52.3 NC_006273.1 + 102999 0.66 0.994571
Target:  5'- cCGGCGUCGgacgcuccuccGGAcgaaacgccgcGG-CGGCAGCGGCc -3'
miRNA:   3'- uGUUGCAGCa----------CCU-----------UCaGUCGUCGUCG- -5'
30153 3' -52.3 NC_006273.1 + 170085 0.66 0.993735
Target:  5'- gGCAGCGgagGUaaGGAAGgugCGGCGGUGGUc -3'
miRNA:   3'- -UGUUGCag-CA--CCUUCa--GUCGUCGUCG- -5'
30153 3' -52.3 NC_006273.1 + 192881 0.66 0.993464
Target:  5'- -aGACGUUGUGGGcGGUCGGUGuauuuuuguggguuGCGGUg -3'
miRNA:   3'- ugUUGCAGCACCU-UCAGUCGU--------------CGUCG- -5'
30153 3' -52.3 NC_006273.1 + 203127 0.66 0.992798
Target:  5'- --cGCGUUGaGGAuAGUCGcGCGGUGGCa -3'
miRNA:   3'- uguUGCAGCaCCU-UCAGU-CGUCGUCG- -5'
30153 3' -52.3 NC_006273.1 + 208857 0.66 0.992798
Target:  5'- -gGAgGUCGUGGAGGcaaCGGgGGUGGUa -3'
miRNA:   3'- ugUUgCAGCACCUUCa--GUCgUCGUCG- -5'
30153 3' -52.3 NC_006273.1 + 167640 0.66 0.992798
Target:  5'- gACAGCaaGUCcUGGuugaacuuGUCAGUAGCGGUu -3'
miRNA:   3'- -UGUUG--CAGcACCuu------CAGUCGUCGUCG- -5'
30153 3' -52.3 NC_006273.1 + 148654 0.66 0.992798
Target:  5'- -uGGCGcCGgaggccggccUGGAGGUCuGCGcGCAGCu -3'
miRNA:   3'- ugUUGCaGC----------ACCUUCAGuCGU-CGUCG- -5'
30153 3' -52.3 NC_006273.1 + 20508 0.66 0.992798
Target:  5'- aGCAACGUCGUG--AGcCAGaCGGCcacGCg -3'
miRNA:   3'- -UGUUGCAGCACcuUCaGUC-GUCGu--CG- -5'
30153 3' -52.3 NC_006273.1 + 190151 0.66 0.992798
Target:  5'- -gGGCGgcaCG-GGcAAGugcuUCAGCAGCAGCu -3'
miRNA:   3'- ugUUGCa--GCaCC-UUC----AGUCGUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.