miRNA display CGI


Results 1 - 20 of 292 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30153 5' -59.7 NC_006273.1 + 164452 0.65 0.880956
Target:  5'- cCGCGgCCGCuCGAugacgaugucggcGCGGCGGCuGCUGa -3'
miRNA:   3'- cGCGUgGGCG-GCU-------------CGCUGCUG-CGAUg -5'
30153 5' -59.7 NC_006273.1 + 199417 0.65 0.880956
Target:  5'- aGCGCccgaAgCCGCgCGAGCGugcgaGCGggguucaccugcaGCGCUACg -3'
miRNA:   3'- -CGCG----UgGGCG-GCUCGC-----UGC-------------UGCGAUG- -5'
30153 5' -59.7 NC_006273.1 + 69920 0.66 0.877612
Target:  5'- gGCuGCGCCCGuuGGugaauguuaccgggcGCGAUGGCccGCUAUc -3'
miRNA:   3'- -CG-CGUGGGCggCU---------------CGCUGCUG--CGAUG- -5'
30153 5' -59.7 NC_006273.1 + 161678 0.66 0.874901
Target:  5'- gGCGC-UCUGCCGGcuGCGGCGGCacucGCUccACg -3'
miRNA:   3'- -CGCGuGGGCGGCU--CGCUGCUG----CGA--UG- -5'
30153 5' -59.7 NC_006273.1 + 24682 0.66 0.874901
Target:  5'- cGCGCugCCGUCGucCGuucCGACaGCUGg -3'
miRNA:   3'- -CGCGugGGCGGCucGCu--GCUG-CGAUg -5'
30153 5' -59.7 NC_006273.1 + 102837 0.66 0.874901
Target:  5'- gGCGCGCCgGCCGcGUccacgGGC-ACGCUGu -3'
miRNA:   3'- -CGCGUGGgCGGCuCG-----CUGcUGCGAUg -5'
30153 5' -59.7 NC_006273.1 + 147763 0.66 0.874901
Target:  5'- gGCGaCACcguaucagcuaCCGCCGcaacAGCGGCGACGg-ACg -3'
miRNA:   3'- -CGC-GUG-----------GGCGGC----UCGCUGCUGCgaUG- -5'
30153 5' -59.7 NC_006273.1 + 121940 0.66 0.874901
Target:  5'- uUGC-CCgugCGCgGAGCGAaGACGCUAUc -3'
miRNA:   3'- cGCGuGG---GCGgCUCGCUgCUGCGAUG- -5'
30153 5' -59.7 NC_006273.1 + 141294 0.66 0.874901
Target:  5'- gGUGCGgCCGCCcAGUGGaaaaauacCGGCGCaUGCg -3'
miRNA:   3'- -CGCGUgGGCGGcUCGCU--------GCUGCG-AUG- -5'
30153 5' -59.7 NC_006273.1 + 81753 0.66 0.874901
Target:  5'- uGCGCGga-GCCGGGCuGCGaACGCUGa -3'
miRNA:   3'- -CGCGUgggCGGCUCGcUGC-UGCGAUg -5'
30153 5' -59.7 NC_006273.1 + 51102 0.66 0.874901
Target:  5'- gGUGCcCCaCGCCGGGaagggGACGACGagGCg -3'
miRNA:   3'- -CGCGuGG-GCGGCUCg----CUGCUGCgaUG- -5'
30153 5' -59.7 NC_006273.1 + 202719 0.66 0.874901
Target:  5'- -gGCAaCCGCuCGGGCcuGCGACGCgACg -3'
miRNA:   3'- cgCGUgGGCG-GCUCGc-UGCUGCGaUG- -5'
30153 5' -59.7 NC_006273.1 + 39152 0.66 0.874901
Target:  5'- aCGaCGCCgggaaaGCCGGGCuGCGGCGgUGCu -3'
miRNA:   3'- cGC-GUGGg-----CGGCUCGcUGCUGCgAUG- -5'
30153 5' -59.7 NC_006273.1 + 75230 0.66 0.874218
Target:  5'- cGCGCACCCGCgucaAGUaccuaugGACGaaGCGCUGg -3'
miRNA:   3'- -CGCGUGGGCGgc--UCG-------CUGC--UGCGAUg -5'
30153 5' -59.7 NC_006273.1 + 166865 0.66 0.872847
Target:  5'- cGUGCGCuCCGCCGAcagguacggcaguuGUuGCGugGCUuuGCc -3'
miRNA:   3'- -CGCGUG-GGCGGCU--------------CGcUGCugCGA--UG- -5'
30153 5' -59.7 NC_006273.1 + 106533 0.66 0.867989
Target:  5'- --aCGCCaCGCUGGcGCGACaGGCGCUGa -3'
miRNA:   3'- cgcGUGG-GCGGCU-CGCUG-CUGCGAUg -5'
30153 5' -59.7 NC_006273.1 + 63770 0.66 0.867989
Target:  5'- gGCGCGCCUcuCgGAG-GACGGCGUgACg -3'
miRNA:   3'- -CGCGUGGGc-GgCUCgCUGCUGCGaUG- -5'
30153 5' -59.7 NC_006273.1 + 139481 0.66 0.867989
Target:  5'- cGUGCuauuuuuuuACCCGCCugGAGCGAaaACGCUc- -3'
miRNA:   3'- -CGCG---------UGGGCGG--CUCGCUgcUGCGAug -5'
30153 5' -59.7 NC_006273.1 + 183614 0.66 0.867989
Target:  5'- uGCGCGCCauccuggaaUCGAGCGGCGAaucCGCg-- -3'
miRNA:   3'- -CGCGUGGgc-------GGCUCGCUGCU---GCGaug -5'
30153 5' -59.7 NC_006273.1 + 80387 0.66 0.867989
Target:  5'- -aGCGgCgGCCGuGGCGGCGGCaGCgGCg -3'
miRNA:   3'- cgCGUgGgCGGC-UCGCUGCUG-CGaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.