miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30154 3' -53.9 NC_006273.1 + 204611 0.66 0.984377
Target:  5'- gCUGCuguuaUCGUCGC-CACCGCCgccggcgccGUUCUc -3'
miRNA:   3'- -GACGc----AGCAGUGaGUGGCGG---------UAAGAu -5'
30154 3' -53.9 NC_006273.1 + 134977 0.66 0.984015
Target:  5'- gUGuCGUCGUCGCgacccgccacaGCCGCCAUg--- -3'
miRNA:   3'- gAC-GCAGCAGUGag---------UGGCGGUAagau -5'
30154 3' -53.9 NC_006273.1 + 192979 0.66 0.980465
Target:  5'- -gGCG-CG-CGCUCGCCGUCGUUg-- -3'
miRNA:   3'- gaCGCaGCaGUGAGUGGCGGUAAgau -5'
30154 3' -53.9 NC_006273.1 + 112239 0.66 0.980465
Target:  5'- -cGCuGUCGUCACUCAC-GCUAUa--- -3'
miRNA:   3'- gaCG-CAGCAGUGAGUGgCGGUAagau -5'
30154 3' -53.9 NC_006273.1 + 226636 0.66 0.980465
Target:  5'- -cGCGUgG-CACUUGCUGCCAUUg-- -3'
miRNA:   3'- gaCGCAgCaGUGAGUGGCGGUAAgau -5'
30154 3' -53.9 NC_006273.1 + 163589 0.66 0.978255
Target:  5'- --cCGUUGUCGC-CACCGCCGcggCUGc -3'
miRNA:   3'- gacGCAGCAGUGaGUGGCGGUaa-GAU- -5'
30154 3' -53.9 NC_006273.1 + 46260 0.66 0.976843
Target:  5'- -aGCGUCGaCACgguacugcaucagcCGCCGCCAUcCUGg -3'
miRNA:   3'- gaCGCAGCaGUGa-------------GUGGCGGUAaGAU- -5'
30154 3' -53.9 NC_006273.1 + 47953 0.66 0.975865
Target:  5'- -cGCGUCGUCGCggauaacagACCGCCGcgCg- -3'
miRNA:   3'- gaCGCAGCAGUGag-------UGGCGGUaaGau -5'
30154 3' -53.9 NC_006273.1 + 187902 0.66 0.975865
Target:  5'- -cGCG-CG--GCUCGCCGUCGUUCUc -3'
miRNA:   3'- gaCGCaGCagUGAGUGGCGGUAAGAu -5'
30154 3' -53.9 NC_006273.1 + 43326 0.66 0.975865
Target:  5'- -aGCGUCGUCGCcccggaCugCGCCcgcggUCUGc -3'
miRNA:   3'- gaCGCAGCAGUGa-----GugGCGGua---AGAU- -5'
30154 3' -53.9 NC_006273.1 + 7202 0.67 0.973288
Target:  5'- uCUGCGauggUCGUCuCUUACUGgCAUUCUc -3'
miRNA:   3'- -GACGC----AGCAGuGAGUGGCgGUAAGAu -5'
30154 3' -53.9 NC_006273.1 + 101134 0.67 0.970518
Target:  5'- aUGCGUCGaa--UCGCCGCCGUg--- -3'
miRNA:   3'- gACGCAGCagugAGUGGCGGUAagau -5'
30154 3' -53.9 NC_006273.1 + 190891 0.67 0.967548
Target:  5'- -cGCGU-GUguCUCACCGCCGcUCg- -3'
miRNA:   3'- gaCGCAgCAguGAGUGGCGGUaAGau -5'
30154 3' -53.9 NC_006273.1 + 108789 0.67 0.967548
Target:  5'- cCUGCGUg--UACUCACUGCUgAUUCUGg -3'
miRNA:   3'- -GACGCAgcaGUGAGUGGCGG-UAAGAU- -5'
30154 3' -53.9 NC_006273.1 + 99331 0.67 0.967548
Target:  5'- gUGCGUCGUC-CUCAUCuCCGcUCg- -3'
miRNA:   3'- gACGCAGCAGuGAGUGGcGGUaAGau -5'
30154 3' -53.9 NC_006273.1 + 94078 0.67 0.964372
Target:  5'- aCUGCGUCGuUCGCUgACUGUaucgggUCUGu -3'
miRNA:   3'- -GACGCAGC-AGUGAgUGGCGgua---AGAU- -5'
30154 3' -53.9 NC_006273.1 + 66347 0.67 0.963378
Target:  5'- -aGCGcCGUCACUuccccuaguaauacCACCGUCAcgUCUAc -3'
miRNA:   3'- gaCGCaGCAGUGA--------------GUGGCGGUa-AGAU- -5'
30154 3' -53.9 NC_006273.1 + 200719 0.67 0.960984
Target:  5'- gCUGC-UCGgcucCGCUCACCGCUccggUCUGg -3'
miRNA:   3'- -GACGcAGCa---GUGAGUGGCGGua--AGAU- -5'
30154 3' -53.9 NC_006273.1 + 38330 0.68 0.95738
Target:  5'- -cGUGUCGUCGCcgcCACCGUCGUcgccgCUGc -3'
miRNA:   3'- gaCGCAGCAGUGa--GUGGCGGUAa----GAU- -5'
30154 3' -53.9 NC_006273.1 + 175488 0.68 0.949505
Target:  5'- uCUGauUCGUCACUCGCCGCg------ -3'
miRNA:   3'- -GACgcAGCAGUGAGUGGCGguaagau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.