miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30154 5' -59.7 NC_006273.1 + 220033 0.66 0.878427
Target:  5'- cGUGGUGGUGcGGGCacaGAUGaCGGuguuCCAu -3'
miRNA:   3'- cCAUCACCGCaCCCG---CUGC-GCCu---GGU- -5'
30154 5' -59.7 NC_006273.1 + 104187 0.66 0.878427
Target:  5'- cGGuUGGUGuugaaaGCGUugacGGCGAUGCGGuCCAg -3'
miRNA:   3'- -CC-AUCAC------CGCAc---CCGCUGCGCCuGGU- -5'
30154 5' -59.7 NC_006273.1 + 78529 0.66 0.878427
Target:  5'- cGGUcccGGCGacggaUGGGCGcgcACGCGGACa- -3'
miRNA:   3'- -CCAucaCCGC-----ACCCGC---UGCGCCUGgu -5'
30154 5' -59.7 NC_006273.1 + 189846 0.66 0.877756
Target:  5'- gGGUGGcaucugcggcaUGGCGggGGGaGACgcgucggGCGGACCGc -3'
miRNA:   3'- -CCAUC-----------ACCGCa-CCCgCUG-------CGCCUGGU- -5'
30154 5' -59.7 NC_006273.1 + 113505 0.66 0.874372
Target:  5'- cGUAGccGGCGgcggguugcccgggGGGCG-CGCGGGCg- -3'
miRNA:   3'- cCAUCa-CCGCa-------------CCCGCuGCGCCUGgu -5'
30154 5' -59.7 NC_006273.1 + 230633 0.66 0.873689
Target:  5'- aGUGGUGGCG-GGGaaucgcucaguccgGACcuggagagagcagGCGGACCGa -3'
miRNA:   3'- cCAUCACCGCaCCCg-------------CUG-------------CGCCUGGU- -5'
30154 5' -59.7 NC_006273.1 + 45830 0.66 0.87163
Target:  5'- uGGU-GUGGCuGUGGcuCGGCGuCGGGCUc -3'
miRNA:   3'- -CCAuCACCG-CACCc-GCUGC-GCCUGGu -5'
30154 5' -59.7 NC_006273.1 + 112230 0.66 0.869554
Target:  5'- cGGUGGcaaugcgcGGCGgGGGCuGGCGCgaggacgugcucauGGACCGg -3'
miRNA:   3'- -CCAUCa-------CCGCaCCCG-CUGCG--------------CCUGGU- -5'
30154 5' -59.7 NC_006273.1 + 167327 0.66 0.864643
Target:  5'- cGGcAGcGGCGgccacGGCGGCGCuGGCCGa -3'
miRNA:   3'- -CCaUCaCCGCac---CCGCUGCGcCUGGU- -5'
30154 5' -59.7 NC_006273.1 + 177147 0.66 0.864643
Target:  5'- gGGgcGUGacgccgucaGUGUGGGCuucGCGCGGcACCGu -3'
miRNA:   3'- -CCauCAC---------CGCACCCGc--UGCGCC-UGGU- -5'
30154 5' -59.7 NC_006273.1 + 801 0.66 0.857471
Target:  5'- ---cGUGGCGUcccGcGGUGuuuuuuuuCGCGGACCAg -3'
miRNA:   3'- ccauCACCGCA---C-CCGCu-------GCGCCUGGU- -5'
30154 5' -59.7 NC_006273.1 + 118028 0.66 0.857471
Target:  5'- cGGUggaAGUGGC--GGGC-ACGCGGGuuCCAa -3'
miRNA:   3'- -CCA---UCACCGcaCCCGcUGCGCCU--GGU- -5'
30154 5' -59.7 NC_006273.1 + 40739 0.66 0.857471
Target:  5'- ---cGUGGCGUcccGcGGUGuuuuuuuuCGCGGACCAg -3'
miRNA:   3'- ccauCACCGCA---C-CCGCu-------GCGCCUGGU- -5'
30154 5' -59.7 NC_006273.1 + 145760 0.66 0.854551
Target:  5'- cGGUAGUGGCuGcGGGgGAaacgacaguaguaGCGGcaGCCAc -3'
miRNA:   3'- -CCAUCACCG-CaCCCgCUg------------CGCC--UGGU- -5'
30154 5' -59.7 NC_006273.1 + 115570 0.66 0.850118
Target:  5'- gGGUGGUGGUgcugcugcuguuGUGGGUG-CGgaCGGugCGg -3'
miRNA:   3'- -CCAUCACCG------------CACCCGCuGC--GCCugGU- -5'
30154 5' -59.7 NC_006273.1 + 100351 0.66 0.850118
Target:  5'- cGUAGUGGCGUGcGCGACccccaguCGGuugaguuccGCCAg -3'
miRNA:   3'- cCAUCACCGCACcCGCUGc------GCC---------UGGU- -5'
30154 5' -59.7 NC_006273.1 + 1021 0.66 0.850118
Target:  5'- uGGUgcgAGUGcuGCGccuacGGCGACGCcGGGCCAc -3'
miRNA:   3'- -CCA---UCAC--CGCac---CCGCUGCG-CCUGGU- -5'
30154 5' -59.7 NC_006273.1 + 163715 0.66 0.850118
Target:  5'- cGGUGGUGGCgGUGGuaGAaacagccgGCGGcagGCCGc -3'
miRNA:   3'- -CCAUCACCG-CACCcgCUg-------CGCC---UGGU- -5'
30154 5' -59.7 NC_006273.1 + 195914 0.66 0.850118
Target:  5'- uGGUgcgAGUGcuGCGccuacGGCGACGCcGGGCCAc -3'
miRNA:   3'- -CCA---UCAC--CGCac---CCGCUGCG-CCUGGU- -5'
30154 5' -59.7 NC_006273.1 + 48561 0.67 0.842591
Target:  5'- aGGcguGUGGCGgggugagGGGCGGCaugccguugGCGGcGCCGg -3'
miRNA:   3'- -CCau-CACCGCa------CCCGCUG---------CGCC-UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.