miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30155 3' -58.8 NC_006273.1 + 58556 0.66 0.895286
Target:  5'- aCC-GCaugAGCgCCGUGUgcaagccagccacgCCGaUGUGCAGCg -3'
miRNA:   3'- -GGuCG---UCG-GGCACGa-------------GGC-ACACGUCG- -5'
30155 3' -58.8 NC_006273.1 + 93586 0.66 0.89276
Target:  5'- gCGGCGGCCUGcGCggCC-UGUaccGCGGCu -3'
miRNA:   3'- gGUCGUCGGGCaCGa-GGcACA---CGUCG- -5'
30155 3' -58.8 NC_006273.1 + 176319 0.66 0.89276
Target:  5'- -gGGCGGCCUGU-CUCCcg--GCGGCu -3'
miRNA:   3'- ggUCGUCGGGCAcGAGGcacaCGUCG- -5'
30155 3' -58.8 NC_006273.1 + 22953 0.66 0.89276
Target:  5'- uUAGCGGCCaCG---UCUGgGUGCAGCa -3'
miRNA:   3'- gGUCGUCGG-GCacgAGGCaCACGUCG- -5'
30155 3' -58.8 NC_006273.1 + 152786 0.66 0.89276
Target:  5'- cCCAGCAcGCCCGUuugcacGCUCUG-GcGCAacgagGCg -3'
miRNA:   3'- -GGUCGU-CGGGCA------CGAGGCaCaCGU-----CG- -5'
30155 3' -58.8 NC_006273.1 + 208912 0.66 0.888907
Target:  5'- uCCAGCGcGCCCagaaccaacaCCgGUGUGCAGCu -3'
miRNA:   3'- -GGUCGU-CGGGcacga-----GG-CACACGUCG- -5'
30155 3' -58.8 NC_006273.1 + 65095 0.66 0.886297
Target:  5'- aUCAGguGCUgaugGUGCUCaCGggcuucggcGUGCAGCu -3'
miRNA:   3'- -GGUCguCGGg---CACGAG-GCa--------CACGUCG- -5'
30155 3' -58.8 NC_006273.1 + 59641 0.66 0.88564
Target:  5'- aCAcGCcGCCCGgGCUCuCGUccuguccGUGCAGUu -3'
miRNA:   3'- gGU-CGuCGGGCaCGAG-GCA-------CACGUCG- -5'
30155 3' -58.8 NC_006273.1 + 12261 0.66 0.884318
Target:  5'- cCUAGCcaGGCCCGUcuggugcuccuGCUaggacguuacgaaaCCGUGUGguGUu -3'
miRNA:   3'- -GGUCG--UCGGGCA-----------CGA--------------GGCACACguCG- -5'
30155 3' -58.8 NC_006273.1 + 189021 0.66 0.87963
Target:  5'- gUCGGgGGCCUGUGCgacgacagCCGcGUGguGg -3'
miRNA:   3'- -GGUCgUCGGGCACGa-------GGCaCACguCg -5'
30155 3' -58.8 NC_006273.1 + 81957 0.66 0.872762
Target:  5'- gCCGGC-GCCCGccgUGC-CgGUGacgaGCAGCg -3'
miRNA:   3'- -GGUCGuCGGGC---ACGaGgCACa---CGUCG- -5'
30155 3' -58.8 NC_006273.1 + 49947 0.66 0.872762
Target:  5'- gCAGCguucgggccaGGCCaCGUGCagCCGgGUGCcGCa -3'
miRNA:   3'- gGUCG----------UCGG-GCACGa-GGCaCACGuCG- -5'
30155 3' -58.8 NC_006273.1 + 133500 0.66 0.872762
Target:  5'- gCGGCGGCCCGgGCUuuGU---UAGCc -3'
miRNA:   3'- gGUCGUCGGGCaCGAggCAcacGUCG- -5'
30155 3' -58.8 NC_006273.1 + 68248 0.66 0.870663
Target:  5'- uCCAGCGGCCCGUcuucaaaacGCUgcuagaucagcaggCCGac-GCGGCc -3'
miRNA:   3'- -GGUCGUCGGGCA---------CGA--------------GGCacaCGUCG- -5'
30155 3' -58.8 NC_006273.1 + 116944 0.66 0.868547
Target:  5'- aCGGCGGCCgaccgugacgggcuaCGUGCacaGUG-GCAGCg -3'
miRNA:   3'- gGUCGUCGG---------------GCACGaggCACaCGUCG- -5'
30155 3' -58.8 NC_006273.1 + 38966 0.66 0.865698
Target:  5'- uCCAcCAGCgaGaGCUCCGUgGUGCuGCa -3'
miRNA:   3'- -GGUcGUCGggCaCGAGGCA-CACGuCG- -5'
30155 3' -58.8 NC_006273.1 + 179991 0.66 0.865698
Target:  5'- --uGCGGgCCGUGC-CgGUGgagucGCAGCa -3'
miRNA:   3'- gguCGUCgGGCACGaGgCACa----CGUCG- -5'
30155 3' -58.8 NC_006273.1 + 78145 0.66 0.865698
Target:  5'- aCGGCAGaaaagCCG-GCUCCaaGUGCAaGCg -3'
miRNA:   3'- gGUCGUCg----GGCaCGAGGcaCACGU-CG- -5'
30155 3' -58.8 NC_006273.1 + 72853 0.67 0.858442
Target:  5'- aCCAGaaaGGCCauCGUGCggacggCCacgGUGUGCAGa -3'
miRNA:   3'- -GGUCg--UCGG--GCACGa-----GG---CACACGUCg -5'
30155 3' -58.8 NC_006273.1 + 86940 0.67 0.851
Target:  5'- aUCAGC-GCCCGauccaGCaaagCCGUauccucGUGCAGCg -3'
miRNA:   3'- -GGUCGuCGGGCa----CGa---GGCA------CACGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.