miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30155 3' -58.8 NC_006273.1 + 151071 1.12 0.001542
Target:  5'- aCCAGCAGCCCGUGCUCCGUGUGCAGCc -3'
miRNA:   3'- -GGUCGUCGGGCACGAGGCACACGUCG- -5'
30155 3' -58.8 NC_006273.1 + 94041 0.81 0.180595
Target:  5'- aCGGCcGCCCGuUGCUCCaacagGUGUGCGGCc -3'
miRNA:   3'- gGUCGuCGGGC-ACGAGG-----CACACGUCG- -5'
30155 3' -58.8 NC_006273.1 + 92548 0.8 0.198684
Target:  5'- aCAGCAGCCCGUGg-CCGUGaGCAGa -3'
miRNA:   3'- gGUCGUCGGGCACgaGGCACaCGUCg -5'
30155 3' -58.8 NC_006273.1 + 185259 0.75 0.396238
Target:  5'- --cGCuGCCCGccuguuccUGCUCCGUGUGuCGGCc -3'
miRNA:   3'- gguCGuCGGGC--------ACGAGGCACAC-GUCG- -5'
30155 3' -58.8 NC_006273.1 + 148655 0.75 0.404382
Target:  5'- gCGGCGGCUgagGUGCUCuCGUgGUGCGGCc -3'
miRNA:   3'- gGUCGUCGGg--CACGAG-GCA-CACGUCG- -5'
30155 3' -58.8 NC_006273.1 + 125965 0.75 0.429435
Target:  5'- gCGGCcuuuuGUCCGUGCaCCGUGgcgGCGGCa -3'
miRNA:   3'- gGUCGu----CGGGCACGaGGCACa--CGUCG- -5'
30155 3' -58.8 NC_006273.1 + 33346 0.74 0.435411
Target:  5'- gCGGCAGCCgCGUGCgaUccugcggcgcguccCCGUGUcGCAGCg -3'
miRNA:   3'- gGUCGUCGG-GCACG--A--------------GGCACA-CGUCG- -5'
30155 3' -58.8 NC_006273.1 + 13196 0.73 0.482145
Target:  5'- aCAGCccgcuacgGGCCCGUGCggcguuacagcgUCUG-GUGCGGCa -3'
miRNA:   3'- gGUCG--------UCGGGCACG------------AGGCaCACGUCG- -5'
30155 3' -58.8 NC_006273.1 + 141269 0.73 0.518965
Target:  5'- cCCGGCacggGGCUCGcGCUCCcuagGUGCGGCc -3'
miRNA:   3'- -GGUCG----UCGGGCaCGAGGca--CACGUCG- -5'
30155 3' -58.8 NC_006273.1 + 96142 0.72 0.537791
Target:  5'- --cGUuucGCCCGUGCUCCGagGaGCAGCg -3'
miRNA:   3'- gguCGu--CGGGCACGAGGCa-CaCGUCG- -5'
30155 3' -58.8 NC_006273.1 + 233377 0.72 0.553018
Target:  5'- gCCGGCGGCcuCCGU-CUCCGUGccgcucgccgcugGCGGCg -3'
miRNA:   3'- -GGUCGUCG--GGCAcGAGGCACa------------CGUCG- -5'
30155 3' -58.8 NC_006273.1 + 38484 0.72 0.553018
Target:  5'- gCCGGCGGCcuCCGU-CUCCGUGccgcucgccgcugGCGGCg -3'
miRNA:   3'- -GGUCGUCG--GGCAcGAGGCACa------------CGUCG- -5'
30155 3' -58.8 NC_006273.1 + 113750 0.72 0.556845
Target:  5'- gCGGCGGCgCCGUGCUCa---UGCAGUc -3'
miRNA:   3'- gGUCGUCG-GGCACGAGgcacACGUCG- -5'
30155 3' -58.8 NC_006273.1 + 131120 0.72 0.58383
Target:  5'- aCCGGCAucucuuccgcacGCCCGUGCUCuCGcccgaacacgGCGGCg -3'
miRNA:   3'- -GGUCGU------------CGGGCACGAG-GCaca-------CGUCG- -5'
30155 3' -58.8 NC_006273.1 + 136836 0.72 0.585769
Target:  5'- aUguGCAGCaucgCGUGCgccUCCGUGUGCuGUg -3'
miRNA:   3'- -GguCGUCGg---GCACG---AGGCACACGuCG- -5'
30155 3' -58.8 NC_006273.1 + 71865 0.71 0.605213
Target:  5'- -gAGCAGCUgGUGUUUCGacUGCGGCg -3'
miRNA:   3'- ggUCGUCGGgCACGAGGCacACGUCG- -5'
30155 3' -58.8 NC_006273.1 + 165143 0.71 0.614966
Target:  5'- aCCAGCucgaAGCCuaacaCGUGUUCCGUGaagaUGCuGCg -3'
miRNA:   3'- -GGUCG----UCGG-----GCACGAGGCAC----ACGuCG- -5'
30155 3' -58.8 NC_006273.1 + 75090 0.71 0.61887
Target:  5'- aCCAGCccGGcCCCGUccaccaGCUCCGUcgccgccgcuaccuuGUGCAGUc -3'
miRNA:   3'- -GGUCG--UC-GGGCA------CGAGGCA---------------CACGUCG- -5'
30155 3' -58.8 NC_006273.1 + 71809 0.71 0.62473
Target:  5'- aCAGCAGgCCGUGC-CCGUGcGaAGUg -3'
miRNA:   3'- gGUCGUCgGGCACGaGGCACaCgUCG- -5'
30155 3' -58.8 NC_006273.1 + 154320 0.71 0.638408
Target:  5'- aCCAcGUucGGCUgGUGCUCCGUGaaucguuacgacugGCGGCa -3'
miRNA:   3'- -GGU-CG--UCGGgCACGAGGCACa-------------CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.