miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30155 3' -58.8 NC_006273.1 + 62132 0.67 0.843377
Target:  5'- gCCAGCAGCCgcUGgUCCGccggGUgaucacGCAGCu -3'
miRNA:   3'- -GGUCGUCGGgcACgAGGCa---CA------CGUCG- -5'
30155 3' -58.8 NC_006273.1 + 36797 0.67 0.843377
Target:  5'- gCGGCAGCaggugcaCGcUGCUCacgaCGUGUGguGUa -3'
miRNA:   3'- gGUCGUCGg------GC-ACGAG----GCACACguCG- -5'
30155 3' -58.8 NC_006273.1 + 94229 0.67 0.843377
Target:  5'- cCCGgcGCAGUCCGcggcaggGUUCCGgccGUGCuGCg -3'
miRNA:   3'- -GGU--CGUCGGGCa------CGAGGCa--CACGuCG- -5'
30155 3' -58.8 NC_006273.1 + 88827 0.67 0.843377
Target:  5'- uCCAGCAGaUCGUGCUCCugauaGU-CAGCc -3'
miRNA:   3'- -GGUCGUCgGGCACGAGGca---CAcGUCG- -5'
30155 3' -58.8 NC_006273.1 + 216385 0.67 0.835579
Target:  5'- gCAGCGcGCCCGUGggCaguaGguccGUGCGGCc -3'
miRNA:   3'- gGUCGU-CGGGCACgaGg---Ca---CACGUCG- -5'
30155 3' -58.8 NC_006273.1 + 217566 0.67 0.835579
Target:  5'- aUAGguGCCCcagGCUUCGgcgGCGGCu -3'
miRNA:   3'- gGUCguCGGGca-CGAGGCacaCGUCG- -5'
30155 3' -58.8 NC_006273.1 + 182837 0.67 0.835579
Target:  5'- aCGGCGGCgaCGaGCUCgGcUGcUGCAGCa -3'
miRNA:   3'- gGUCGUCGg-GCaCGAGgC-AC-ACGUCG- -5'
30155 3' -58.8 NC_006273.1 + 56992 0.67 0.83479
Target:  5'- aCAGCGugUCGUGCUCCGUaacuauacgcaacGUGCAcgGCa -3'
miRNA:   3'- gGUCGUcgGGCACGAGGCA-------------CACGU--CG- -5'
30155 3' -58.8 NC_006273.1 + 194817 0.67 0.827613
Target:  5'- aCCGGCAGCgCGcagaaaGCgCCGUG-GaCAGCa -3'
miRNA:   3'- -GGUCGUCGgGCa-----CGaGGCACaC-GUCG- -5'
30155 3' -58.8 NC_006273.1 + 234755 0.67 0.827613
Target:  5'- aCCGGCAGCgCGcagaaaGCgCCGUG-GaCAGCa -3'
miRNA:   3'- -GGUCGUCGgGCa-----CGaGGCACaC-GUCG- -5'
30155 3' -58.8 NC_006273.1 + 204734 0.67 0.827613
Target:  5'- -aAGCcGCCCG-GCgcgucgUCUGUGUGCGGg -3'
miRNA:   3'- ggUCGuCGGGCaCG------AGGCACACGUCg -5'
30155 3' -58.8 NC_006273.1 + 188649 0.68 0.8112
Target:  5'- -aAGCAGCCgCGUcuuaagcgGCUCCGaGUaCAGCa -3'
miRNA:   3'- ggUCGUCGG-GCA--------CGAGGCaCAcGUCG- -5'
30155 3' -58.8 NC_006273.1 + 32743 0.68 0.8112
Target:  5'- gUAGCAGgCCGcGCUCCagcaacUGCGGCa -3'
miRNA:   3'- gGUCGUCgGGCaCGAGGcac---ACGUCG- -5'
30155 3' -58.8 NC_006273.1 + 164741 0.68 0.8112
Target:  5'- gCAGCAGCaCCGUGU--CGUGgucggGCAaGCu -3'
miRNA:   3'- gGUCGUCG-GGCACGagGCACa----CGU-CG- -5'
30155 3' -58.8 NC_006273.1 + 30176 0.68 0.808686
Target:  5'- cCCGGgGGCCCGUcgcacaccacGCUCCGUcuucuuguccucaccGCGGCc -3'
miRNA:   3'- -GGUCgUCGGGCA----------CGAGGCAca-------------CGUCG- -5'
30155 3' -58.8 NC_006273.1 + 133291 0.68 0.802768
Target:  5'- gCAGCGGCUCGUcGUcacCCGcGUGUGGCc -3'
miRNA:   3'- gGUCGUCGGGCA-CGa--GGCaCACGUCG- -5'
30155 3' -58.8 NC_006273.1 + 213396 0.68 0.802768
Target:  5'- gCCAGCAGCCCGauCUUCGgauccGU-CAGCc -3'
miRNA:   3'- -GGUCGUCGGGCacGAGGCa----CAcGUCG- -5'
30155 3' -58.8 NC_006273.1 + 148583 0.68 0.802768
Target:  5'- cCCGGUuucccGCCCGUGC-CCGUcuacGCGGUc -3'
miRNA:   3'- -GGUCGu----CGGGCACGaGGCAca--CGUCG- -5'
30155 3' -58.8 NC_006273.1 + 36470 0.68 0.801917
Target:  5'- uUAGCGGCUCGgGCuggcgugcuguuuUCCGUGUugccgacgGCGGCg -3'
miRNA:   3'- gGUCGUCGGGCaCG-------------AGGCACA--------CGUCG- -5'
30155 3' -58.8 NC_006273.1 + 13588 0.68 0.794196
Target:  5'- cCgGGCGGCCCGgGCcgCCGUGcUGgAGg -3'
miRNA:   3'- -GgUCGUCGGGCaCGa-GGCAC-ACgUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.