miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30155 3' -58.8 NC_006273.1 + 12261 0.66 0.884318
Target:  5'- cCUAGCcaGGCCCGUcuggugcuccuGCUaggacguuacgaaaCCGUGUGguGUu -3'
miRNA:   3'- -GGUCG--UCGGGCA-----------CGA--------------GGCACACguCG- -5'
30155 3' -58.8 NC_006273.1 + 13196 0.73 0.482145
Target:  5'- aCAGCccgcuacgGGCCCGUGCggcguuacagcgUCUG-GUGCGGCa -3'
miRNA:   3'- gGUCG--------UCGGGCACG------------AGGCaCACGUCG- -5'
30155 3' -58.8 NC_006273.1 + 13588 0.68 0.794196
Target:  5'- cCgGGCGGCCCGgGCcgCCGUGcUGgAGg -3'
miRNA:   3'- -GgUCGUCGGGCaCGa-GGCAC-ACgUCg -5'
30155 3' -58.8 NC_006273.1 + 22953 0.66 0.89276
Target:  5'- uUAGCGGCCaCG---UCUGgGUGCAGCa -3'
miRNA:   3'- gGUCGUCGG-GCacgAGGCaCACGUCG- -5'
30155 3' -58.8 NC_006273.1 + 28575 0.68 0.776659
Target:  5'- gCAuGCAGCCgGccagcGCUCUaagcgaggcgGUGUGCGGCa -3'
miRNA:   3'- gGU-CGUCGGgCa----CGAGG----------CACACGUCG- -5'
30155 3' -58.8 NC_006273.1 + 30176 0.68 0.808686
Target:  5'- cCCGGgGGCCCGUcgcacaccacGCUCCGUcuucuuguccucaccGCGGCc -3'
miRNA:   3'- -GGUCgUCGGGCA----------CGAGGCAca-------------CGUCG- -5'
30155 3' -58.8 NC_006273.1 + 32743 0.68 0.8112
Target:  5'- gUAGCAGgCCGcGCUCCagcaacUGCGGCa -3'
miRNA:   3'- gGUCGUCgGGCaCGAGGcac---ACGUCG- -5'
30155 3' -58.8 NC_006273.1 + 33346 0.74 0.435411
Target:  5'- gCGGCAGCCgCGUGCgaUccugcggcgcguccCCGUGUcGCAGCg -3'
miRNA:   3'- gGUCGUCGG-GCACG--A--------------GGCACA-CGUCG- -5'
30155 3' -58.8 NC_006273.1 + 33475 0.71 0.644268
Target:  5'- aCAGCAGCUCGcGCUUgaUGcGCAGCg -3'
miRNA:   3'- gGUCGUCGGGCaCGAGgcACaCGUCG- -5'
30155 3' -58.8 NC_006273.1 + 36470 0.68 0.801917
Target:  5'- uUAGCGGCUCGgGCuggcgugcuguuuUCCGUGUugccgacgGCGGCg -3'
miRNA:   3'- gGUCGUCGGGCaCG-------------AGGCACA--------CGUCG- -5'
30155 3' -58.8 NC_006273.1 + 36797 0.67 0.843377
Target:  5'- gCGGCAGCaggugcaCGcUGCUCacgaCGUGUGguGUa -3'
miRNA:   3'- gGUCGUCGg------GC-ACGAG----GCACACguCG- -5'
30155 3' -58.8 NC_006273.1 + 38484 0.72 0.553018
Target:  5'- gCCGGCGGCcuCCGU-CUCCGUGccgcucgccgcugGCGGCg -3'
miRNA:   3'- -GGUCGUCG--GGCAcGAGGCACa------------CGUCG- -5'
30155 3' -58.8 NC_006273.1 + 38966 0.66 0.865698
Target:  5'- uCCAcCAGCgaGaGCUCCGUgGUGCuGCa -3'
miRNA:   3'- -GGUcGUCGggCaCGAGGCA-CACGuCG- -5'
30155 3' -58.8 NC_006273.1 + 39426 0.68 0.791598
Target:  5'- cCCGGCGGCCCGcgggGUUcuacccgguggacgCCGUGgccCGGCg -3'
miRNA:   3'- -GGUCGUCGGGCa---CGA--------------GGCACac-GUCG- -5'
30155 3' -58.8 NC_006273.1 + 39703 0.69 0.721474
Target:  5'- gCGGaCGGCuCCGUcgUCCGUGUGCcacGGCa -3'
miRNA:   3'- gGUC-GUCG-GGCAcgAGGCACACG---UCG- -5'
30155 3' -58.8 NC_006273.1 + 49947 0.66 0.872762
Target:  5'- gCAGCguucgggccaGGCCaCGUGCagCCGgGUGCcGCa -3'
miRNA:   3'- gGUCG----------UCGG-GCACGa-GGCaCACGuCG- -5'
30155 3' -58.8 NC_006273.1 + 56992 0.67 0.83479
Target:  5'- aCAGCGugUCGUGCUCCGUaacuauacgcaacGUGCAcgGCa -3'
miRNA:   3'- gGUCGUcgGGCACGAGGCA-------------CACGU--CG- -5'
30155 3' -58.8 NC_006273.1 + 58556 0.66 0.895286
Target:  5'- aCC-GCaugAGCgCCGUGUgcaagccagccacgCCGaUGUGCAGCg -3'
miRNA:   3'- -GGuCG---UCG-GGCACGa-------------GGC-ACACGUCG- -5'
30155 3' -58.8 NC_006273.1 + 59641 0.66 0.88564
Target:  5'- aCAcGCcGCCCGgGCUCuCGUccuguccGUGCAGUu -3'
miRNA:   3'- gGU-CGuCGGGCaCGAG-GCA-------CACGUCG- -5'
30155 3' -58.8 NC_006273.1 + 62132 0.67 0.843377
Target:  5'- gCCAGCAGCCgcUGgUCCGccggGUgaucacGCAGCu -3'
miRNA:   3'- -GGUCGUCGGgcACgAGGCa---CA------CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.