miRNA display CGI


Results 1 - 20 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30155 3' -58.8 NC_006273.1 + 213036 0.69 0.730893
Target:  5'- gCCAGCugccacacgAGCCCGUGauagacCUCCaUGaGCAGCu -3'
miRNA:   3'- -GGUCG---------UCGGGCAC------GAGGcACaCGUCG- -5'
30155 3' -58.8 NC_006273.1 + 33475 0.71 0.644268
Target:  5'- aCAGCAGCUCGcGCUUgaUGcGCAGCg -3'
miRNA:   3'- gGUCGUCGGGCaCGAGgcACaCGUCG- -5'
30155 3' -58.8 NC_006273.1 + 121305 0.7 0.66377
Target:  5'- aCAGCAGCCCaaaaUGCUC-GUGUGaGGUa -3'
miRNA:   3'- gGUCGUCGGGc---ACGAGgCACACgUCG- -5'
30155 3' -58.8 NC_006273.1 + 156765 0.7 0.66377
Target:  5'- -gAGCAGCUaggcuuggugGUGCUCCGcGUGCGGg -3'
miRNA:   3'- ggUCGUCGGg---------CACGAGGCaCACGUCg -5'
30155 3' -58.8 NC_006273.1 + 142029 0.7 0.670577
Target:  5'- aCCAGCgucGGCCCGUGgUgCCGUccacgucgucucgcgGCAGCg -3'
miRNA:   3'- -GGUCG---UCGGGCACgA-GGCAca-------------CGUCG- -5'
30155 3' -58.8 NC_006273.1 + 124931 0.7 0.683179
Target:  5'- -gAGCAGUCCGUGCgUCgGUacGUGUAGg -3'
miRNA:   3'- ggUCGUCGGGCACG-AGgCA--CACGUCg -5'
30155 3' -58.8 NC_006273.1 + 105401 0.7 0.702435
Target:  5'- aCAGCAGCcgCCGgucgaGC-CCGUGcaGCAGCa -3'
miRNA:   3'- gGUCGUCG--GGCa----CGaGGCACa-CGUCG- -5'
30155 3' -58.8 NC_006273.1 + 221803 0.7 0.702435
Target:  5'- aCGGCGGCCCGggccGC-CCGgcggGUG-AGCa -3'
miRNA:   3'- gGUCGUCGGGCa---CGaGGCa---CACgUCG- -5'
30155 3' -58.8 NC_006273.1 + 234595 0.69 0.721474
Target:  5'- gCGGaCGGCuCCGUcgUCCGUGUGCcacGGCa -3'
miRNA:   3'- gGUC-GUCG-GGCAcgAGGCACACG---UCG- -5'
30155 3' -58.8 NC_006273.1 + 219239 0.71 0.644268
Target:  5'- uCCAGCAGUUgGUcgcgcaGCUCCGgcaugGUGCuGCc -3'
miRNA:   3'- -GGUCGUCGGgCA------CGAGGCa----CACGuCG- -5'
30155 3' -58.8 NC_006273.1 + 71809 0.71 0.62473
Target:  5'- aCAGCAGgCCGUGC-CCGUGcGaAGUg -3'
miRNA:   3'- gGUCGUCgGGCACGaGGCACaCgUCG- -5'
30155 3' -58.8 NC_006273.1 + 75090 0.71 0.61887
Target:  5'- aCCAGCccGGcCCCGUccaccaGCUCCGUcgccgccgcuaccuuGUGCAGUc -3'
miRNA:   3'- -GGUCG--UC-GGGCA------CGAGGCA---------------CACGUCG- -5'
30155 3' -58.8 NC_006273.1 + 185259 0.75 0.396238
Target:  5'- --cGCuGCCCGccuguuccUGCUCCGUGUGuCGGCc -3'
miRNA:   3'- gguCGuCGGGC--------ACGAGGCACAC-GUCG- -5'
30155 3' -58.8 NC_006273.1 + 148655 0.75 0.404382
Target:  5'- gCGGCGGCUgagGUGCUCuCGUgGUGCGGCc -3'
miRNA:   3'- gGUCGUCGGg--CACGAG-GCA-CACGUCG- -5'
30155 3' -58.8 NC_006273.1 + 125965 0.75 0.429435
Target:  5'- gCGGCcuuuuGUCCGUGCaCCGUGgcgGCGGCa -3'
miRNA:   3'- gGUCGu----CGGGCACGaGGCACa--CGUCG- -5'
30155 3' -58.8 NC_006273.1 + 33346 0.74 0.435411
Target:  5'- gCGGCAGCCgCGUGCgaUccugcggcgcguccCCGUGUcGCAGCg -3'
miRNA:   3'- gGUCGUCGG-GCACG--A--------------GGCACA-CGUCG- -5'
30155 3' -58.8 NC_006273.1 + 233377 0.72 0.553018
Target:  5'- gCCGGCGGCcuCCGU-CUCCGUGccgcucgccgcugGCGGCg -3'
miRNA:   3'- -GGUCGUCG--GGCAcGAGGCACa------------CGUCG- -5'
30155 3' -58.8 NC_006273.1 + 113750 0.72 0.556845
Target:  5'- gCGGCGGCgCCGUGCUCa---UGCAGUc -3'
miRNA:   3'- gGUCGUCG-GGCACGAGgcacACGUCG- -5'
30155 3' -58.8 NC_006273.1 + 136836 0.72 0.585769
Target:  5'- aUguGCAGCaucgCGUGCgccUCCGUGUGCuGUg -3'
miRNA:   3'- -GguCGUCGg---GCACG---AGGCACACGuCG- -5'
30155 3' -58.8 NC_006273.1 + 165143 0.71 0.614966
Target:  5'- aCCAGCucgaAGCCuaacaCGUGUUCCGUGaagaUGCuGCg -3'
miRNA:   3'- -GGUCG----UCGG-----GCACGAGGCAC----ACGuCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.