miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30155 5' -55.4 NC_006273.1 + 213691 0.66 0.97241
Target:  5'- gUCGCaggaGCGguCCGaguggcgcAGGUCGuGCACg -3'
miRNA:   3'- -AGCGg---CGCguGGCau------UUCAGCuCGUG- -5'
30155 5' -55.4 NC_006273.1 + 92949 0.66 0.97241
Target:  5'- gUCGUCGUGUGaCGUGGAGUCG-GCc- -3'
miRNA:   3'- -AGCGGCGCGUgGCAUUUCAGCuCGug -5'
30155 5' -55.4 NC_006273.1 + 69755 0.66 0.97241
Target:  5'- -gGCCGCgGCACCGUGcugcGUCuGAGUc- -3'
miRNA:   3'- agCGGCG-CGUGGCAUuu--CAG-CUCGug -5'
30155 5' -55.4 NC_006273.1 + 168313 0.66 0.97241
Target:  5'- cUCGUCGCGCGCC----AGUCGcauCACu -3'
miRNA:   3'- -AGCGGCGCGUGGcauuUCAGCuc-GUG- -5'
30155 5' -55.4 NC_006273.1 + 150548 0.66 0.97241
Target:  5'- cCGCCGCG-GCCGUc---UCGGGUGCc -3'
miRNA:   3'- aGCGGCGCgUGGCAuuucAGCUCGUG- -5'
30155 5' -55.4 NC_006273.1 + 111961 0.66 0.97241
Target:  5'- cUGCCGCGCggugGCgGUcAAGUCugGAGCGu -3'
miRNA:   3'- aGCGGCGCG----UGgCAuUUCAG--CUCGUg -5'
30155 5' -55.4 NC_006273.1 + 131622 0.66 0.97241
Target:  5'- -gGCaCGCGCGCgGUugc-UCGAGUACc -3'
miRNA:   3'- agCG-GCGCGUGgCAuuucAGCUCGUG- -5'
30155 5' -55.4 NC_006273.1 + 177260 0.66 0.97241
Target:  5'- cCGCUGCGCGugcCCGUGGugaauuacgcguGGUUgGAGCAg -3'
miRNA:   3'- aGCGGCGCGU---GGCAUU------------UCAG-CUCGUg -5'
30155 5' -55.4 NC_006273.1 + 91755 0.66 0.97048
Target:  5'- -gGCUuuGCGuCACCGccaacuaacgucgguAGUCGAGCACg -3'
miRNA:   3'- agCGG--CGC-GUGGCauu------------UCAGCUCGUG- -5'
30155 5' -55.4 NC_006273.1 + 200900 0.66 0.969624
Target:  5'- aCGCCgGCGCuuuccGCCGUcuGGUgcaCGAGgCGCa -3'
miRNA:   3'- aGCGG-CGCG-----UGGCAuuUCA---GCUC-GUG- -5'
30155 5' -55.4 NC_006273.1 + 201965 0.66 0.969624
Target:  5'- cUGUCGCGCGCCGccgacgcccGAGG-CGGuGCGCg -3'
miRNA:   3'- aGCGGCGCGUGGCa--------UUUCaGCU-CGUG- -5'
30155 5' -55.4 NC_006273.1 + 227379 0.66 0.969624
Target:  5'- cCGCCGC-CACCGUc-AGUC--GCACc -3'
miRNA:   3'- aGCGGCGcGUGGCAuuUCAGcuCGUG- -5'
30155 5' -55.4 NC_006273.1 + 64991 0.66 0.969624
Target:  5'- gUUGgCGCGCGCCGUGGucuucacCGAGgACc -3'
miRNA:   3'- -AGCgGCGCGUGGCAUUuca----GCUCgUG- -5'
30155 5' -55.4 NC_006273.1 + 125972 0.66 0.969624
Target:  5'- uUUGuCCGUGCACCGUGgcGgCG-GCAUu -3'
miRNA:   3'- -AGC-GGCGCGUGGCAUuuCaGCuCGUG- -5'
30155 5' -55.4 NC_006273.1 + 213840 0.66 0.969334
Target:  5'- gCGCCGCGcCGCCGUcc--UCGAaacgccaGCGCc -3'
miRNA:   3'- aGCGGCGC-GUGGCAuuucAGCU-------CGUG- -5'
30155 5' -55.4 NC_006273.1 + 128069 0.66 0.969043
Target:  5'- -gGuCCGCGUuCCGUGAAGgucuguagacaGGGCGCg -3'
miRNA:   3'- agC-GGCGCGuGGCAUUUCag---------CUCGUG- -5'
30155 5' -55.4 NC_006273.1 + 147869 0.66 0.96875
Target:  5'- cCGCCGcCGCGCUGgcAAacuccgacauucgcGUCG-GCGCc -3'
miRNA:   3'- aGCGGC-GCGUGGCauUU--------------CAGCuCGUG- -5'
30155 5' -55.4 NC_006273.1 + 86615 0.66 0.967858
Target:  5'- gCGCCGC-CGCCGgccucgguaccGAAGaccugccacucauccUCGGGCACg -3'
miRNA:   3'- aGCGGCGcGUGGCa----------UUUC---------------AGCUCGUG- -5'
30155 5' -55.4 NC_006273.1 + 145135 0.66 0.966642
Target:  5'- uUCGCCGC-CGCCGauaccuuUCGAGgACg -3'
miRNA:   3'- -AGCGGCGcGUGGCauuuc--AGCUCgUG- -5'
30155 5' -55.4 NC_006273.1 + 195800 0.66 0.966642
Target:  5'- gUCGCCGCGCcccCCGccccucGGUCGcGGcCGCg -3'
miRNA:   3'- -AGCGGCGCGu--GGCauu---UCAGC-UC-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.