miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30155 5' -55.4 NC_006273.1 + 54964 0.66 0.960071
Target:  5'- -gGUgGCGUggaaACCGUc--GUCGGGCACa -3'
miRNA:   3'- agCGgCGCG----UGGCAuuuCAGCUCGUG- -5'
30155 5' -55.4 NC_006273.1 + 61275 0.66 0.966642
Target:  5'- gCGCgGCGCGCgCGgccGAGGcCGuGUACa -3'
miRNA:   3'- aGCGgCGCGUG-GCa--UUUCaGCuCGUG- -5'
30155 5' -55.4 NC_006273.1 + 177260 0.66 0.97241
Target:  5'- cCGCUGCGCGugcCCGUGGugaauuacgcguGGUUgGAGCAg -3'
miRNA:   3'- aGCGGCGCGU---GGCAUU------------UCAG-CUCGUg -5'
30155 5' -55.4 NC_006273.1 + 60539 0.66 0.956472
Target:  5'- -gGCCG-GCACCGau--GUgCGGGCACc -3'
miRNA:   3'- agCGGCgCGUGGCauuuCA-GCUCGUG- -5'
30155 5' -55.4 NC_006273.1 + 142335 0.66 0.960071
Target:  5'- -aGCUGCGCGCgG-AAAGUCaggacAGCGCc -3'
miRNA:   3'- agCGGCGCGUGgCaUUUCAGc----UCGUG- -5'
30155 5' -55.4 NC_006273.1 + 151238 0.66 0.960071
Target:  5'- -gGCCGCGCcgcuccucgucuGCCGUGAucaAG-CG-GCGCg -3'
miRNA:   3'- agCGGCGCG------------UGGCAUU---UCaGCuCGUG- -5'
30155 5' -55.4 NC_006273.1 + 94383 0.66 0.956472
Target:  5'- -gGCCGUGgGCCGggcac-CGGGCGCg -3'
miRNA:   3'- agCGGCGCgUGGCauuucaGCUCGUG- -5'
30155 5' -55.4 NC_006273.1 + 152486 0.66 0.960071
Target:  5'- cCGCUccgaGCGCACCuucuUGAAGacgcguaccUCGGGCGCg -3'
miRNA:   3'- aGCGG----CGCGUGGc---AUUUC---------AGCUCGUG- -5'
30155 5' -55.4 NC_006273.1 + 70926 0.66 0.956472
Target:  5'- cCGCCGCGCcgacAUCGUca--UCGAGCGg -3'
miRNA:   3'- aGCGGCGCG----UGGCAuuucAGCUCGUg -5'
30155 5' -55.4 NC_006273.1 + 91079 0.66 0.956472
Target:  5'- cCGCCGCGCacaacGCCGcc-AGaUCGguaGGCACg -3'
miRNA:   3'- aGCGGCGCG-----UGGCauuUC-AGC---UCGUG- -5'
30155 5' -55.4 NC_006273.1 + 145135 0.66 0.966642
Target:  5'- uUCGCCGC-CGCCGauaccuuUCGAGgACg -3'
miRNA:   3'- -AGCGGCGcGUGGCauuuc--AGCUCgUG- -5'
30155 5' -55.4 NC_006273.1 + 90951 0.66 0.966642
Target:  5'- cUCGCCGCcgugcagucGCACCGU--GGUCGccuccuccacGCAUg -3'
miRNA:   3'- -AGCGGCG---------CGUGGCAuuUCAGCu---------CGUG- -5'
30155 5' -55.4 NC_006273.1 + 195800 0.66 0.966642
Target:  5'- gUCGCCGCGCcccCCGccccucGGUCGcGGcCGCg -3'
miRNA:   3'- -AGCGGCGCGu--GGCauu---UCAGC-UC-GUG- -5'
30155 5' -55.4 NC_006273.1 + 226726 0.66 0.956472
Target:  5'- aCGCCaGCGcCugCGUGA---CGGGCACc -3'
miRNA:   3'- aGCGG-CGC-GugGCAUUucaGCUCGUG- -5'
30155 5' -55.4 NC_006273.1 + 102845 0.66 0.966642
Target:  5'- -gGCCGCGUccacgggcacGCUGUuGGGU-GGGCACg -3'
miRNA:   3'- agCGGCGCG----------UGGCAuUUCAgCUCGUG- -5'
30155 5' -55.4 NC_006273.1 + 216510 0.66 0.960071
Target:  5'- gUGCCcaGUGCGCCGUGccagCGcAGCACg -3'
miRNA:   3'- aGCGG--CGCGUGGCAUuucaGC-UCGUG- -5'
30155 5' -55.4 NC_006273.1 + 28861 0.66 0.963459
Target:  5'- aCGCUGUGCAucCCGUccuucGUCGcGCACc -3'
miRNA:   3'- aGCGGCGCGU--GGCAuuu--CAGCuCGUG- -5'
30155 5' -55.4 NC_006273.1 + 33404 0.66 0.956472
Target:  5'- gCGCuggaCGCGCACCGccucgGgcGUCGgcGGCGCg -3'
miRNA:   3'- aGCG----GCGCGUGGCa----UuuCAGC--UCGUG- -5'
30155 5' -55.4 NC_006273.1 + 151820 0.66 0.963459
Target:  5'- gCGCCGCGaggcguaGCgCGUGAgcaGGUCGcGCAg -3'
miRNA:   3'- aGCGGCGCg------UG-GCAUU---UCAGCuCGUg -5'
30155 5' -55.4 NC_006273.1 + 76099 0.66 0.960071
Target:  5'- -gGCCG-GCACCGgc--GUCauGAGCACc -3'
miRNA:   3'- agCGGCgCGUGGCauuuCAG--CUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.