miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30155 5' -55.4 NC_006273.1 + 151106 1.1 0.004612
Target:  5'- gUCGCCGCGCACCGUAAAGUCGAGCACu -3'
miRNA:   3'- -AGCGGCGCGUGGCAUUUCAGCUCGUG- -5'
30155 5' -55.4 NC_006273.1 + 71858 0.78 0.441086
Target:  5'- aCGCCGCGUACCaccacaGUGGAGUCGcaGGUGCg -3'
miRNA:   3'- aGCGGCGCGUGG------CAUUUCAGC--UCGUG- -5'
30155 5' -55.4 NC_006273.1 + 158213 0.76 0.514689
Target:  5'- -gGUCGUGCAgCGUGAGGcgCGGGCGCg -3'
miRNA:   3'- agCGGCGCGUgGCAUUUCa-GCUCGUG- -5'
30155 5' -55.4 NC_006273.1 + 164736 0.76 0.533888
Target:  5'- gUCGCgcaGCaGCACCGUGucguGGUCGGGCAa -3'
miRNA:   3'- -AGCGg--CG-CGUGGCAUu---UCAGCUCGUg -5'
30155 5' -55.4 NC_006273.1 + 140901 0.75 0.553334
Target:  5'- cUCGUCGCGCACCuGUuu-GUUGuGCGCg -3'
miRNA:   3'- -AGCGGCGCGUGG-CAuuuCAGCuCGUG- -5'
30155 5' -55.4 NC_006273.1 + 153078 0.75 0.582876
Target:  5'- cCGCCGaCGggacCACCGUGAcGUCGGGCAg -3'
miRNA:   3'- aGCGGC-GC----GUGGCAUUuCAGCUCGUg -5'
30155 5' -55.4 NC_006273.1 + 74182 0.75 0.602749
Target:  5'- aCGUgGCGCGCCGgcGAGaCGAGCu- -3'
miRNA:   3'- aGCGgCGCGUGGCauUUCaGCUCGug -5'
30155 5' -55.4 NC_006273.1 + 196592 0.75 0.602749
Target:  5'- gUUGCUGCGCGCCGaGAGG-CGAcgGCGCu -3'
miRNA:   3'- -AGCGGCGCGUGGCaUUUCaGCU--CGUG- -5'
30155 5' -55.4 NC_006273.1 + 1699 0.74 0.61272
Target:  5'- gUUGCUGCGCGCCGaGGAGgCGAcgGCGCu -3'
miRNA:   3'- -AGCGGCGCGUGGCaUUUCaGCU--CGUG- -5'
30155 5' -55.4 NC_006273.1 + 103011 0.74 0.61272
Target:  5'- cCGUCGCGCAgCCGUAaaucaAAGUCGGcCACa -3'
miRNA:   3'- aGCGGCGCGU-GGCAU-----UUCAGCUcGUG- -5'
30155 5' -55.4 NC_006273.1 + 102151 0.74 0.622705
Target:  5'- gCGCCGuCGcCACCGUAcAGgugauaggCGAGCACc -3'
miRNA:   3'- aGCGGC-GC-GUGGCAUuUCa-------GCUCGUG- -5'
30155 5' -55.4 NC_006273.1 + 191406 0.74 0.622705
Target:  5'- gUCGCCGUa-GCCGUc--GUCGAGCGCg -3'
miRNA:   3'- -AGCGGCGcgUGGCAuuuCAGCUCGUG- -5'
30155 5' -55.4 NC_006273.1 + 195856 0.74 0.642688
Target:  5'- aUGuuGCGCGCCGUGAucuuGUcCGAGaCGCg -3'
miRNA:   3'- aGCggCGCGUGGCAUUu---CA-GCUC-GUG- -5'
30155 5' -55.4 NC_006273.1 + 187855 0.74 0.652671
Target:  5'- cUCGCCuucGCGCGCCGUGggaucggcuucGAGaUCGAGCu- -3'
miRNA:   3'- -AGCGG---CGCGUGGCAU-----------UUC-AGCUCGug -5'
30155 5' -55.4 NC_006273.1 + 76560 0.74 0.662639
Target:  5'- aCGUgGCGCGCUGUGGAcUCGaAGCGCc -3'
miRNA:   3'- aGCGgCGCGUGGCAUUUcAGC-UCGUG- -5'
30155 5' -55.4 NC_006273.1 + 142773 0.73 0.672583
Target:  5'- cCGCaCGCGCGCCGcu-GG-CGAGCAa -3'
miRNA:   3'- aGCG-GCGCGUGGCauuUCaGCUCGUg -5'
30155 5' -55.4 NC_006273.1 + 53767 0.73 0.682496
Target:  5'- gCGCaCGUGCACCGUcuGGGcCGGGCAa -3'
miRNA:   3'- aGCG-GCGCGUGGCAu-UUCaGCUCGUg -5'
30155 5' -55.4 NC_006273.1 + 216586 0.73 0.682496
Target:  5'- cUCGCCGCGCAauCCGc--GGUCGaAGCGg -3'
miRNA:   3'- -AGCGGCGCGU--GGCauuUCAGC-UCGUg -5'
30155 5' -55.4 NC_006273.1 + 141163 0.73 0.692369
Target:  5'- cUGCCGCggacuGCGCCGggGGGcggCGGGCACg -3'
miRNA:   3'- aGCGGCG-----CGUGGCauUUCa--GCUCGUG- -5'
30155 5' -55.4 NC_006273.1 + 179995 0.73 0.702195
Target:  5'- -gGCCGUGC-CgGUGGAGUCGcAGCAg -3'
miRNA:   3'- agCGGCGCGuGgCAUUUCAGC-UCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.