miRNA display CGI


Results 21 - 40 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30155 5' -55.4 NC_006273.1 + 908 0.66 0.966642
Target:  5'- gUCGCCGCGCcccCCGccccucGGUCGcGGcCGCg -3'
miRNA:   3'- -AGCGGCGCGu--GGCauu---UCAGC-UC-GUG- -5'
30155 5' -55.4 NC_006273.1 + 90951 0.66 0.966642
Target:  5'- cUCGCCGCcgugcagucGCACCGU--GGUCGccuccuccacGCAUg -3'
miRNA:   3'- -AGCGGCG---------CGUGGCAuuUCAGCu---------CGUG- -5'
30155 5' -55.4 NC_006273.1 + 61275 0.66 0.966642
Target:  5'- gCGCgGCGCGCgCGgccGAGGcCGuGUACa -3'
miRNA:   3'- aGCGgCGCGUG-GCa--UUUCaGCuCGUG- -5'
30155 5' -55.4 NC_006273.1 + 102845 0.66 0.966642
Target:  5'- -gGCCGCGUccacgggcacGCUGUuGGGU-GGGCACg -3'
miRNA:   3'- agCGGCGCG----------UGGCAuUUCAgCUCGUG- -5'
30155 5' -55.4 NC_006273.1 + 145135 0.66 0.966642
Target:  5'- uUCGCCGC-CGCCGauaccuuUCGAGgACg -3'
miRNA:   3'- -AGCGGCGcGUGGCauuuc--AGCUCgUG- -5'
30155 5' -55.4 NC_006273.1 + 28861 0.66 0.963459
Target:  5'- aCGCUGUGCAucCCGUccuucGUCGcGCACc -3'
miRNA:   3'- aGCGGCGCGU--GGCAuuu--CAGCuCGUG- -5'
30155 5' -55.4 NC_006273.1 + 79698 0.66 0.963459
Target:  5'- -gGCCGUGCgcgaagugagGCCGUAGuccacGGUgGuGCACa -3'
miRNA:   3'- agCGGCGCG----------UGGCAUU-----UCAgCuCGUG- -5'
30155 5' -55.4 NC_006273.1 + 151820 0.66 0.963459
Target:  5'- gCGCCGCGaggcguaGCgCGUGAgcaGGUCGcGCAg -3'
miRNA:   3'- aGCGGCGCg------UG-GCAUU---UCAGCuCGUg -5'
30155 5' -55.4 NC_006273.1 + 206435 0.66 0.963459
Target:  5'- aCGUCGCG-ACCGUGGAaaccCGGGCAa -3'
miRNA:   3'- aGCGGCGCgUGGCAUUUca--GCUCGUg -5'
30155 5' -55.4 NC_006273.1 + 6279 0.66 0.963459
Target:  5'- gCGCCGgGUACUGUGGcgcAGUCGuuucCACc -3'
miRNA:   3'- aGCGGCgCGUGGCAUU---UCAGCuc--GUG- -5'
30155 5' -55.4 NC_006273.1 + 166321 0.66 0.963459
Target:  5'- gUCGCCuGCGguuuCCGU-GGGUUGGGCAg -3'
miRNA:   3'- -AGCGG-CGCgu--GGCAuUUCAGCUCGUg -5'
30155 5' -55.4 NC_006273.1 + 118609 0.66 0.963459
Target:  5'- gUCGUCGCaGCGCCGgcuggAGAG-CGAGagGCc -3'
miRNA:   3'- -AGCGGCG-CGUGGCa----UUUCaGCUCg-UG- -5'
30155 5' -55.4 NC_006273.1 + 201908 0.66 0.963459
Target:  5'- gUCGCUGCGCAUC---AAGcgCGAGCuGCu -3'
miRNA:   3'- -AGCGGCGCGUGGcauUUCa-GCUCG-UG- -5'
30155 5' -55.4 NC_006273.1 + 170406 0.66 0.963459
Target:  5'- aCGgCGCGCGCCaacGAGUugacggugaCGAGUACg -3'
miRNA:   3'- aGCgGCGCGUGGcauUUCA---------GCUCGUG- -5'
30155 5' -55.4 NC_006273.1 + 176614 0.66 0.963459
Target:  5'- cUCGCUGCGUguuuGCgCGUAgcGaCGAGCAg -3'
miRNA:   3'- -AGCGGCGCG----UG-GCAUuuCaGCUCGUg -5'
30155 5' -55.4 NC_006273.1 + 215900 0.66 0.963459
Target:  5'- cCGCCGCGCcaGCUGgcacGGAGUUG-GCGu -3'
miRNA:   3'- aGCGGCGCG--UGGCa---UUUCAGCuCGUg -5'
30155 5' -55.4 NC_006273.1 + 216510 0.66 0.960071
Target:  5'- gUGCCcaGUGCGCCGUGccagCGcAGCACg -3'
miRNA:   3'- aGCGG--CGCGUGGCAUuucaGC-UCGUG- -5'
30155 5' -55.4 NC_006273.1 + 151238 0.66 0.960071
Target:  5'- -gGCCGCGCcgcuccucgucuGCCGUGAucaAG-CG-GCGCg -3'
miRNA:   3'- agCGGCGCG------------UGGCAUU---UCaGCuCGUG- -5'
30155 5' -55.4 NC_006273.1 + 152486 0.66 0.960071
Target:  5'- cCGCUccgaGCGCACCuucuUGAAGacgcguaccUCGGGCGCg -3'
miRNA:   3'- aGCGG----CGCGUGGc---AUUUC---------AGCUCGUG- -5'
30155 5' -55.4 NC_006273.1 + 69920 0.66 0.960071
Target:  5'- -gGCUGCGC-CCGUu-GGUgaauguuacCGGGCGCg -3'
miRNA:   3'- agCGGCGCGuGGCAuuUCA---------GCUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.