miRNA display CGI


Results 1 - 20 of 190 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30155 5' -55.4 NC_006273.1 + 908 0.66 0.966642
Target:  5'- gUCGCCGCGCcccCCGccccucGGUCGcGGcCGCg -3'
miRNA:   3'- -AGCGGCGCGu--GGCauu---UCAGC-UC-GUG- -5'
30155 5' -55.4 NC_006273.1 + 1331 0.68 0.9251
Target:  5'- aCGCCGCGCAgCCagaUGAAcGgcgUGGGCGCg -3'
miRNA:   3'- aGCGGCGCGU-GGc--AUUU-Ca--GCUCGUG- -5'
30155 5' -55.4 NC_006273.1 + 1699 0.74 0.61272
Target:  5'- gUUGCUGCGCGCCGaGGAGgCGAcgGCGCu -3'
miRNA:   3'- -AGCGGCGCGUGGCaUUUCaGCU--CGUG- -5'
30155 5' -55.4 NC_006273.1 + 2041 0.67 0.952658
Target:  5'- gCGCCGUGCgcgauggcaggaGCCGUGGGGUCu-GCu- -3'
miRNA:   3'- aGCGGCGCG------------UGGCAUUUCAGcuCGug -5'
30155 5' -55.4 NC_006273.1 + 2288 0.71 0.813273
Target:  5'- -aGCUGgGCGCCGUGu--UCGGGUACu -3'
miRNA:   3'- agCGGCgCGUGGCAUuucAGCUCGUG- -5'
30155 5' -55.4 NC_006273.1 + 2501 0.69 0.88268
Target:  5'- gCGCCGCGCugUGggcgcgCGAGcCGCa -3'
miRNA:   3'- aGCGGCGCGugGCauuucaGCUC-GUG- -5'
30155 5' -55.4 NC_006273.1 + 6279 0.66 0.963459
Target:  5'- gCGCCGgGUACUGUGGcgcAGUCGuuucCACc -3'
miRNA:   3'- aGCGGCgCGUGGCAUU---UCAGCuc--GUG- -5'
30155 5' -55.4 NC_006273.1 + 15421 0.72 0.759668
Target:  5'- aCGCCGCGUugcCCGauGAGcgacgCGAGCGCg -3'
miRNA:   3'- aGCGGCGCGu--GGCauUUCa----GCUCGUG- -5'
30155 5' -55.4 NC_006273.1 + 18472 0.68 0.919714
Target:  5'- aCGCCGgguCGCACCG--AGGUgGAGC-Cg -3'
miRNA:   3'- aGCGGC---GCGUGGCauUUCAgCUCGuG- -5'
30155 5' -55.4 NC_006273.1 + 21497 0.67 0.939893
Target:  5'- aUGCCGC-CACCGgu-GGcCGAGCu- -3'
miRNA:   3'- aGCGGCGcGUGGCauuUCaGCUCGug -5'
30155 5' -55.4 NC_006273.1 + 27964 0.67 0.954209
Target:  5'- cUUGCCGgGUACCugAAGccccgacgacuguucGUCGAGCACc -3'
miRNA:   3'- -AGCGGCgCGUGGcaUUU---------------CAGCUCGUG- -5'
30155 5' -55.4 NC_006273.1 + 28861 0.66 0.963459
Target:  5'- aCGCUGUGCAucCCGUccuucGUCGcGCACc -3'
miRNA:   3'- aGCGGCGCGU--GGCAuuu--CAGCuCGUG- -5'
30155 5' -55.4 NC_006273.1 + 33092 0.68 0.9251
Target:  5'- aUCGCCGCGCcUCGUc-GGUCGAugacccCACg -3'
miRNA:   3'- -AGCGGCGCGuGGCAuuUCAGCUc-----GUG- -5'
30155 5' -55.4 NC_006273.1 + 33404 0.66 0.956472
Target:  5'- gCGCuggaCGCGCACCGccucgGgcGUCGgcGGCGCg -3'
miRNA:   3'- aGCG----GCGCGUGGCa----UuuCAGC--UCGUG- -5'
30155 5' -55.4 NC_006273.1 + 33733 0.68 0.919714
Target:  5'- aCGCCGUGUACuCGUGAcGUauacuGGCGCg -3'
miRNA:   3'- aGCGGCGCGUG-GCAUUuCAgc---UCGUG- -5'
30155 5' -55.4 NC_006273.1 + 34612 0.67 0.939433
Target:  5'- cUUGCCGUGCGCCGU-------AGCGCa -3'
miRNA:   3'- -AGCGGCGCGUGGCAuuucagcUCGUG- -5'
30155 5' -55.4 NC_006273.1 + 36871 0.68 0.902195
Target:  5'- -gGUCGCGgACCGcGGAGUCGGGgAg -3'
miRNA:   3'- agCGGCGCgUGGCaUUUCAGCUCgUg -5'
30155 5' -55.4 NC_006273.1 + 38085 0.69 0.895908
Target:  5'- cCGCCGCGCGgccUCGgc-GG-CGGGCGCc -3'
miRNA:   3'- aGCGGCGCGU---GGCauuUCaGCUCGUG- -5'
30155 5' -55.4 NC_006273.1 + 38904 0.68 0.916373
Target:  5'- cUCGCC-CGCGCCGUGccgaaccacucguccGcGUCGcGCGCc -3'
miRNA:   3'- -AGCGGcGCGUGGCAU---------------UuCAGCuCGUG- -5'
30155 5' -55.4 NC_006273.1 + 39053 0.69 0.88268
Target:  5'- cUUGUCGCcCACCGUcgGGUCGGcCGCg -3'
miRNA:   3'- -AGCGGCGcGUGGCAuuUCAGCUcGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.