Results 1 - 20 of 190 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30155 | 5' | -55.4 | NC_006273.1 | + | 126623 | 0.7 | 0.845986 |
Target: 5'- aCGCCGCGCAgaUgGUGGGGuUUGAGUAg -3' miRNA: 3'- aGCGGCGCGU--GgCAUUUC-AGCUCGUg -5' |
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30155 | 5' | -55.4 | NC_006273.1 | + | 216586 | 0.73 | 0.682496 |
Target: 5'- cUCGCCGCGCAauCCGc--GGUCGaAGCGg -3' miRNA: 3'- -AGCGGCGCGU--GGCauuUCAGC-UCGUg -5' |
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30155 | 5' | -55.4 | NC_006273.1 | + | 42717 | 0.73 | 0.711964 |
Target: 5'- gCGCCGUGUuggcguGCCGguccagguUAAGGUCGAGCGg -3' miRNA: 3'- aGCGGCGCG------UGGC--------AUUUCAGCUCGUg -5' |
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30155 | 5' | -55.4 | NC_006273.1 | + | 188151 | 0.73 | 0.711964 |
Target: 5'- -gGCCGgGuCGCCGaguuccGGGUCGGGCACa -3' miRNA: 3'- agCGGCgC-GUGGCau----UUCAGCUCGUG- -5' |
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30155 | 5' | -55.4 | NC_006273.1 | + | 122004 | 0.73 | 0.711964 |
Target: 5'- gUCGCCGCggugGCAUggCGUcGAGUCGGGCGu -3' miRNA: 3'- -AGCGGCG----CGUG--GCAuUUCAGCUCGUg -5' |
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30155 | 5' | -55.4 | NC_006273.1 | + | 197181 | 0.71 | 0.813273 |
Target: 5'- -aGCUGgGCGCCGUGu--UCGGGUACu -3' miRNA: 3'- agCGGCgCGUGGCAUuucAGCUCGUG- -5' |
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30155 | 5' | -55.4 | NC_006273.1 | + | 156733 | 0.71 | 0.813273 |
Target: 5'- cUCGCgUGCGCGgUGUGAcuGGUUGAGCGa -3' miRNA: 3'- -AGCG-GCGCGUgGCAUU--UCAGCUCGUg -5' |
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30155 | 5' | -55.4 | NC_006273.1 | + | 119895 | 0.7 | 0.836463 |
Target: 5'- uUCGCCGcCGCGCCGcuggcucugaaaGAGGUgcaguccgcuaaCGGGCACg -3' miRNA: 3'- -AGCGGC-GCGUGGCa-----------UUUCA------------GCUCGUG- -5' |
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30155 | 5' | -55.4 | NC_006273.1 | + | 128951 | 0.7 | 0.838068 |
Target: 5'- -aGCCGCGUuccauggcgucgGCCGUGuuuUUGAGCGCg -3' miRNA: 3'- agCGGCGCG------------UGGCAUuucAGCUCGUG- -5' |
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30155 | 5' | -55.4 | NC_006273.1 | + | 53767 | 0.73 | 0.682496 |
Target: 5'- gCGCaCGUGCACCGUcuGGGcCGGGCAa -3' miRNA: 3'- aGCG-GCGCGUGGCAu-UUCaGCUCGUg -5' |
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30155 | 5' | -55.4 | NC_006273.1 | + | 142773 | 0.73 | 0.672583 |
Target: 5'- cCGCaCGCGCGCCGcu-GG-CGAGCAa -3' miRNA: 3'- aGCG-GCGCGUGGCauuUCaGCUCGUg -5' |
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30155 | 5' | -55.4 | NC_006273.1 | + | 76560 | 0.74 | 0.662639 |
Target: 5'- aCGUgGCGCGCUGUGGAcUCGaAGCGCc -3' miRNA: 3'- aGCGgCGCGUGGCAUUUcAGC-UCGUG- -5' |
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30155 | 5' | -55.4 | NC_006273.1 | + | 71858 | 0.78 | 0.441086 |
Target: 5'- aCGCCGCGUACCaccacaGUGGAGUCGcaGGUGCg -3' miRNA: 3'- aGCGGCGCGUGG------CAUUUCAGC--UCGUG- -5' |
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30155 | 5' | -55.4 | NC_006273.1 | + | 164736 | 0.76 | 0.533888 |
Target: 5'- gUCGCgcaGCaGCACCGUGucguGGUCGGGCAa -3' miRNA: 3'- -AGCGg--CG-CGUGGCAUu---UCAGCUCGUg -5' |
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30155 | 5' | -55.4 | NC_006273.1 | + | 140901 | 0.75 | 0.553334 |
Target: 5'- cUCGUCGCGCACCuGUuu-GUUGuGCGCg -3' miRNA: 3'- -AGCGGCGCGUGG-CAuuuCAGCuCGUG- -5' |
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30155 | 5' | -55.4 | NC_006273.1 | + | 74182 | 0.75 | 0.602749 |
Target: 5'- aCGUgGCGCGCCGgcGAGaCGAGCu- -3' miRNA: 3'- aGCGgCGCGUGGCauUUCaGCUCGug -5' |
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30155 | 5' | -55.4 | NC_006273.1 | + | 196592 | 0.75 | 0.602749 |
Target: 5'- gUUGCUGCGCGCCGaGAGG-CGAcgGCGCu -3' miRNA: 3'- -AGCGGCGCGUGGCaUUUCaGCU--CGUG- -5' |
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30155 | 5' | -55.4 | NC_006273.1 | + | 103011 | 0.74 | 0.61272 |
Target: 5'- cCGUCGCGCAgCCGUAaaucaAAGUCGGcCACa -3' miRNA: 3'- aGCGGCGCGU-GGCAU-----UUCAGCUcGUG- -5' |
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30155 | 5' | -55.4 | NC_006273.1 | + | 102151 | 0.74 | 0.622705 |
Target: 5'- gCGCCGuCGcCACCGUAcAGgugauaggCGAGCACc -3' miRNA: 3'- aGCGGC-GC-GUGGCAUuUCa-------GCUCGUG- -5' |
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30155 | 5' | -55.4 | NC_006273.1 | + | 191406 | 0.74 | 0.622705 |
Target: 5'- gUCGCCGUa-GCCGUc--GUCGAGCGCg -3' miRNA: 3'- -AGCGGCGcgUGGCAuuuCAGCUCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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