miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30156 3' -57.3 NC_006273.1 + 101974 0.66 0.936784
Target:  5'- cGUCGCUUgaCGGCcacgCAgcaGGCGCCGu -3'
miRNA:   3'- -CGGCGAAgcGCCGa---GUaaaCCGCGGC- -5'
30156 3' -57.3 NC_006273.1 + 36463 0.66 0.936784
Target:  5'- uGCgGCcuuaGCGGCUCGggcUGGCGUg- -3'
miRNA:   3'- -CGgCGaag-CGCCGAGUaa-ACCGCGgc -5'
30156 3' -57.3 NC_006273.1 + 124438 0.66 0.936784
Target:  5'- gGCCGCgcgggcgugCGCGGCUCGccgacgcuGCGCUc -3'
miRNA:   3'- -CGGCGaa-------GCGCCGAGUaaac----CGCGGc -5'
30156 3' -57.3 NC_006273.1 + 233490 0.66 0.936784
Target:  5'- aGCCGCagcacagaCGCuGGUUCA---GGUGCCGa -3'
miRNA:   3'- -CGGCGaa------GCG-CCGAGUaaaCCGCGGC- -5'
30156 3' -57.3 NC_006273.1 + 38597 0.66 0.936784
Target:  5'- aGCCGCagcacagaCGCuGGUUCA---GGUGCCGa -3'
miRNA:   3'- -CGGCGaa------GCG-CCGAGUaaaCCGCGGC- -5'
30156 3' -57.3 NC_006273.1 + 90649 0.66 0.931999
Target:  5'- aCUGCUgagUCGCuGGCUCAUguaccccaagUagcgcuuaugUGGCGCCa -3'
miRNA:   3'- cGGCGA---AGCG-CCGAGUA----------A----------ACCGCGGc -5'
30156 3' -57.3 NC_006273.1 + 163089 0.66 0.931999
Target:  5'- cGCCGCgcugCGCGGCggccUCAUcgGcaGCGUCa -3'
miRNA:   3'- -CGGCGaa--GCGCCG----AGUAaaC--CGCGGc -5'
30156 3' -57.3 NC_006273.1 + 102112 0.66 0.931999
Target:  5'- aGCCGCUgcaaguccgugUCggaaaucgcaGCGGCag---UGGCGCCGu -3'
miRNA:   3'- -CGGCGA-----------AG----------CGCCGaguaaACCGCGGC- -5'
30156 3' -57.3 NC_006273.1 + 147783 0.66 0.931999
Target:  5'- cGCCGCaacaGCGGCgaCGgacGGCGUCGc -3'
miRNA:   3'- -CGGCGaag-CGCCGa-GUaaaCCGCGGC- -5'
30156 3' -57.3 NC_006273.1 + 147823 0.66 0.931999
Target:  5'- uGCCGagcCGCGGCUucacaCGUUcgUGGUGCgCGg -3'
miRNA:   3'- -CGGCgaaGCGCCGA-----GUAA--ACCGCG-GC- -5'
30156 3' -57.3 NC_006273.1 + 34159 0.66 0.931015
Target:  5'- cGCCGCUU--CGGCUCGcgccauaaacgUGGCGUgGa -3'
miRNA:   3'- -CGGCGAAgcGCCGAGUaa---------ACCGCGgC- -5'
30156 3' -57.3 NC_006273.1 + 157225 0.66 0.926992
Target:  5'- uGCUGC--CGCGGCgcuugCAcUUGGaGCCGg -3'
miRNA:   3'- -CGGCGaaGCGCCGa----GUaAACCgCGGC- -5'
30156 3' -57.3 NC_006273.1 + 153777 0.66 0.921764
Target:  5'- gGCCGCUUcggccuccgcCGCGGC-CGc--GGCcGCCGc -3'
miRNA:   3'- -CGGCGAA----------GCGCCGaGUaaaCCG-CGGC- -5'
30156 3' -57.3 NC_006273.1 + 88575 0.66 0.921764
Target:  5'- -aCGCgccacagUgGCGGC-CAUg-GGCGCCGg -3'
miRNA:   3'- cgGCGa------AgCGCCGaGUAaaCCGCGGC- -5'
30156 3' -57.3 NC_006273.1 + 127225 0.66 0.920152
Target:  5'- cGCCGUggugUCGCGcCUCGaugUUGGCcggguucaacgguuGCCGg -3'
miRNA:   3'- -CGGCGa---AGCGCcGAGUa--AACCG--------------CGGC- -5'
30156 3' -57.3 NC_006273.1 + 132366 0.66 0.916315
Target:  5'- gGCCGCUgccgcCGCGGCguuUCGUccGGaggagcguccgaCGCCGg -3'
miRNA:   3'- -CGGCGAa----GCGCCG---AGUAaaCC------------GCGGC- -5'
30156 3' -57.3 NC_006273.1 + 101625 0.66 0.916315
Target:  5'- gGCCGCgugagUGCaGCUCca-UGGCcGCCGu -3'
miRNA:   3'- -CGGCGaa---GCGcCGAGuaaACCG-CGGC- -5'
30156 3' -57.3 NC_006273.1 + 63173 0.66 0.916315
Target:  5'- uCCGUcUCGCGGCgCGgccGGCGCgGc -3'
miRNA:   3'- cGGCGaAGCGCCGaGUaaaCCGCGgC- -5'
30156 3' -57.3 NC_006273.1 + 131470 0.66 0.915198
Target:  5'- uCCGCuUUCGUGGCguacgccgUGGCGCg- -3'
miRNA:   3'- cGGCG-AAGCGCCGaguaa---ACCGCGgc -5'
30156 3' -57.3 NC_006273.1 + 156314 0.66 0.914637
Target:  5'- uCCGCUUucguggccugacgcCGCaGGCUCuggUGGCGCg- -3'
miRNA:   3'- cGGCGAA--------------GCG-CCGAGuaaACCGCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.