miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30156 3' -57.3 NC_006273.1 + 151341 1.12 0.002408
Target:  5'- cGCCGCUUCGCGGCUCAUUUGGCGCCGg -3'
miRNA:   3'- -CGGCGAAGCGCCGAGUAAACCGCGGC- -5'
30156 3' -57.3 NC_006273.1 + 38083 0.82 0.214441
Target:  5'- aGCCGCcgCGCGGcCUCGgcggcgGGCGCCGa -3'
miRNA:   3'- -CGGCGaaGCGCC-GAGUaaa---CCGCGGC- -5'
30156 3' -57.3 NC_006273.1 + 232976 0.82 0.214441
Target:  5'- aGCCGCcgCGCGGcCUCGgcggcgGGCGCCGa -3'
miRNA:   3'- -CGGCGaaGCGCC-GAGUaaa---CCGCGGC- -5'
30156 3' -57.3 NC_006273.1 + 213061 0.76 0.416675
Target:  5'- cGUCGgagUCGCGGCgUUcgUUGGCGCCGc -3'
miRNA:   3'- -CGGCga-AGCGCCG-AGuaAACCGCGGC- -5'
30156 3' -57.3 NC_006273.1 + 192651 0.76 0.416675
Target:  5'- cGUCGCUaUGCGGCUCGUcgccgugUGGCGCgGc -3'
miRNA:   3'- -CGGCGAaGCGCCGAGUAa------ACCGCGgC- -5'
30156 3' -57.3 NC_006273.1 + 179258 0.75 0.493605
Target:  5'- cGCCGCcucCGCGGCcCGUUUcgacgaaauccggcGGCGCCGc -3'
miRNA:   3'- -CGGCGaa-GCGCCGaGUAAA--------------CCGCGGC- -5'
30156 3' -57.3 NC_006273.1 + 139664 0.75 0.496377
Target:  5'- uGUCGCggaCGUGGCUUGUgggacgGGCGCCGu -3'
miRNA:   3'- -CGGCGaa-GCGCCGAGUAaa----CCGCGGC- -5'
30156 3' -57.3 NC_006273.1 + 40546 0.74 0.532057
Target:  5'- cGCCGCUUCuGCGGCUUgcuguccacGGCGCUu -3'
miRNA:   3'- -CGGCGAAG-CGCCGAGuaaa-----CCGCGGc -5'
30156 3' -57.3 NC_006273.1 + 608 0.74 0.532057
Target:  5'- cGCCGCUUCuGCGGCUUgcuguccacGGCGCUu -3'
miRNA:   3'- -CGGCGAAG-CGCCGAGuaaa-----CCGCGGc -5'
30156 3' -57.3 NC_006273.1 + 25972 0.73 0.572508
Target:  5'- cGCCGCUggaaCGCGcGCUU--UUGGCgGCCGu -3'
miRNA:   3'- -CGGCGAa---GCGC-CGAGuaAACCG-CGGC- -5'
30156 3' -57.3 NC_006273.1 + 33136 0.73 0.611676
Target:  5'- cGCCGC--CGCGGCuUCAUgUGGCGUg- -3'
miRNA:   3'- -CGGCGaaGCGCCG-AGUAaACCGCGgc -5'
30156 3' -57.3 NC_006273.1 + 106227 0.72 0.651066
Target:  5'- uGCCGCgg-GUGGC-CAgc-GGCGCCGg -3'
miRNA:   3'- -CGGCGaagCGCCGaGUaaaCCGCGGC- -5'
30156 3' -57.3 NC_006273.1 + 76536 0.72 0.670707
Target:  5'- cGCCGCUcggCGCGGCgCAcgaggacgUGGCGCg- -3'
miRNA:   3'- -CGGCGAa--GCGCCGaGUaa------ACCGCGgc -5'
30156 3' -57.3 NC_006273.1 + 149485 0.71 0.719161
Target:  5'- gGUgGUUUCGCGGCgggaCAUUgcggUGGCGCUu -3'
miRNA:   3'- -CGgCGAAGCGCCGa---GUAA----ACCGCGGc -5'
30156 3' -57.3 NC_006273.1 + 35969 0.71 0.719161
Target:  5'- cGCaCGCUcgCGCGGCUUcg--GGCGCUu -3'
miRNA:   3'- -CG-GCGAa-GCGCCGAGuaaaCCGCGGc -5'
30156 3' -57.3 NC_006273.1 + 171058 0.71 0.719161
Target:  5'- -aUGCggagUCGCGGCgguuggGGCGCCGa -3'
miRNA:   3'- cgGCGa---AGCGCCGaguaaaCCGCGGC- -5'
30156 3' -57.3 NC_006273.1 + 144422 0.7 0.738115
Target:  5'- cGCCGCggCGgcggaCGGUUCGggUGGCGgCGg -3'
miRNA:   3'- -CGGCGaaGC-----GCCGAGUaaACCGCgGC- -5'
30156 3' -57.3 NC_006273.1 + 47823 0.7 0.747468
Target:  5'- cGCCGgUUCGCGGaccugUCGUcgcugggccUcGGCGCCGu -3'
miRNA:   3'- -CGGCgAAGCGCCg----AGUA---------AaCCGCGGC- -5'
30156 3' -57.3 NC_006273.1 + 124189 0.7 0.756728
Target:  5'- cGCCGCcUCGUcuGGCUCGUggccgacgGGC-CCGa -3'
miRNA:   3'- -CGGCGaAGCG--CCGAGUAaa------CCGcGGC- -5'
30156 3' -57.3 NC_006273.1 + 231728 0.7 0.765885
Target:  5'- uGCCGCUgaUCGCaguGGCcccaccucggCAUgccGGCGCCGg -3'
miRNA:   3'- -CGGCGA--AGCG---CCGa---------GUAaa-CCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.