miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30156 3' -57.3 NC_006273.1 + 113263 0.66 0.914073
Target:  5'- aGCCGUguuuagUCGCGGCgauacgccGGUGCUGc -3'
miRNA:   3'- -CGGCGa-----AGCGCCGaguaaa--CCGCGGC- -5'
30156 3' -57.3 NC_006273.1 + 20508 0.67 0.910645
Target:  5'- cGCCGCa--GCGGCUUu----GUGCCGa -3'
miRNA:   3'- -CGGCGaagCGCCGAGuaaacCGCGGC- -5'
30156 3' -57.3 NC_006273.1 + 140863 0.67 0.910645
Target:  5'- gGCCGCUucUCGgGGCgCGa--GGUGCCc -3'
miRNA:   3'- -CGGCGA--AGCgCCGaGUaaaCCGCGGc -5'
30156 3' -57.3 NC_006273.1 + 196232 0.67 0.910645
Target:  5'- cGCCGCagCcCGGCUUucccGGCGUCGu -3'
miRNA:   3'- -CGGCGaaGcGCCGAGuaaaCCGCGGC- -5'
30156 3' -57.3 NC_006273.1 + 166660 0.67 0.910645
Target:  5'- uUCGUUgacaGCGGCaaGUggGGCGCCGc -3'
miRNA:   3'- cGGCGAag--CGCCGagUAaaCCGCGGC- -5'
30156 3' -57.3 NC_006273.1 + 151789 0.67 0.910645
Target:  5'- cGUCGCgcgCGCccaGGCUCAUggaguccucGCGCCGc -3'
miRNA:   3'- -CGGCGaa-GCG---CCGAGUAaac------CGCGGC- -5'
30156 3' -57.3 NC_006273.1 + 130759 0.67 0.908901
Target:  5'- cGCgGCUUUGCGacggcacaucagcaGCUCGcacaGGCGCUGg -3'
miRNA:   3'- -CGgCGAAGCGC--------------CGAGUaaa-CCGCGGC- -5'
30156 3' -57.3 NC_006273.1 + 46030 0.67 0.904756
Target:  5'- aGCCGCUggaucuggaacUGgGGCUCAUgcgggUGGCcacccacccGCCGa -3'
miRNA:   3'- -CGGCGAa----------GCgCCGAGUAa----ACCG---------CGGC- -5'
30156 3' -57.3 NC_006273.1 + 145087 0.67 0.904756
Target:  5'- cGCCGCUg-GCGGC------GGCGCUGa -3'
miRNA:   3'- -CGGCGAagCGCCGaguaaaCCGCGGC- -5'
30156 3' -57.3 NC_006273.1 + 188196 0.67 0.904756
Target:  5'- uCUGCUUCucuGCcGCUCG--UGGUGCCGa -3'
miRNA:   3'- cGGCGAAG---CGcCGAGUaaACCGCGGC- -5'
30156 3' -57.3 NC_006273.1 + 201579 0.67 0.904155
Target:  5'- cCCGCgUCGCGGCUacgCAUguaccUGGCcuccaacGCCGu -3'
miRNA:   3'- cGGCGaAGCGCCGA---GUAa----ACCG-------CGGC- -5'
30156 3' -57.3 NC_006273.1 + 197065 0.67 0.89865
Target:  5'- gGCgGCggcaGCGGCagCAgcggcGGCGCCGa -3'
miRNA:   3'- -CGgCGaag-CGCCGa-GUaaa--CCGCGGC- -5'
30156 3' -57.3 NC_006273.1 + 2172 0.67 0.89865
Target:  5'- gGCgGCggcaGCGGCagCAgcggcGGCGCCGa -3'
miRNA:   3'- -CGgCGaag-CGCCGa-GUaaa--CCGCGGC- -5'
30156 3' -57.3 NC_006273.1 + 153423 0.67 0.89865
Target:  5'- cGCUGC-UCGUcaccGGCaCGgcgGGCGCCGg -3'
miRNA:   3'- -CGGCGaAGCG----CCGaGUaaaCCGCGGC- -5'
30156 3' -57.3 NC_006273.1 + 139916 0.67 0.89865
Target:  5'- uGgCGCUUCGaggaGGC-CGUaaauaUGGCGCUGg -3'
miRNA:   3'- -CgGCGAAGCg---CCGaGUAa----ACCGCGGC- -5'
30156 3' -57.3 NC_006273.1 + 186500 0.67 0.89233
Target:  5'- aGCCGCUa-GCGGCaagUAgcgcgagcugUGGCGCCc -3'
miRNA:   3'- -CGGCGAagCGCCGa--GUaa--------ACCGCGGc -5'
30156 3' -57.3 NC_006273.1 + 144228 0.67 0.890392
Target:  5'- gGCgGCUcggacgacuacgUGUGGCUCAgccgguugcuggaUUUGGCGCCc -3'
miRNA:   3'- -CGgCGAa-----------GCGCCGAGU-------------AAACCGCGGc -5'
30156 3' -57.3 NC_006273.1 + 130977 0.67 0.885798
Target:  5'- -gUGCUcggacUCGCGGCggg--UGGCGCCc -3'
miRNA:   3'- cgGCGA-----AGCGCCGaguaaACCGCGGc -5'
30156 3' -57.3 NC_006273.1 + 101702 0.67 0.885798
Target:  5'- aCCGCUgccgggggGCGGgUCAcc-GGCGCCGu -3'
miRNA:   3'- cGGCGAag------CGCCgAGUaaaCCGCGGC- -5'
30156 3' -57.3 NC_006273.1 + 162033 0.67 0.885798
Target:  5'- cCCGCUggUGCuGGCUCuucugcUGGUGCUGg -3'
miRNA:   3'- cGGCGAa-GCG-CCGAGuaa---ACCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.