miRNA display CGI


Results 1 - 20 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30156 3' -57.3 NC_006273.1 + 557 0.68 0.862791
Target:  5'- cGCCGCcggUGCGGgaCAgggcuaagcgccuuUaUGGCGCCGc -3'
miRNA:   3'- -CGGCGaa-GCGCCgaGU--------------AaACCGCGGC- -5'
30156 3' -57.3 NC_006273.1 + 608 0.74 0.532057
Target:  5'- cGCCGCUUCuGCGGCUUgcuguccacGGCGCUu -3'
miRNA:   3'- -CGGCGAAG-CGCCGAGuaaa-----CCGCGGc -5'
30156 3' -57.3 NC_006273.1 + 1383 0.69 0.801333
Target:  5'- cGCCGCgggacgCGUGGaUCGUgcuggUGGCGaCCGu -3'
miRNA:   3'- -CGGCGaa----GCGCCgAGUAa----ACCGC-GGC- -5'
30156 3' -57.3 NC_006273.1 + 2172 0.67 0.89865
Target:  5'- gGCgGCggcaGCGGCagCAgcggcGGCGCCGa -3'
miRNA:   3'- -CGgCGaag-CGCCGa-GUaaa--CCGCGGC- -5'
30156 3' -57.3 NC_006273.1 + 20508 0.67 0.910645
Target:  5'- cGCCGCa--GCGGCUUu----GUGCCGa -3'
miRNA:   3'- -CGGCGaagCGCCGAGuaaacCGCGGC- -5'
30156 3' -57.3 NC_006273.1 + 25426 0.68 0.857635
Target:  5'- uGCCGCguggCGCuGCaCAccuaUGGCGCCGu -3'
miRNA:   3'- -CGGCGaa--GCGcCGaGUaa--ACCGCGGC- -5'
30156 3' -57.3 NC_006273.1 + 25972 0.73 0.572508
Target:  5'- cGCCGCUggaaCGCGcGCUU--UUGGCgGCCGu -3'
miRNA:   3'- -CGGCGAa---GCGC-CGAGuaAACCG-CGGC- -5'
30156 3' -57.3 NC_006273.1 + 30670 0.69 0.826457
Target:  5'- gGCgGCUUCcuGCGGC-CGgccgcGGUGCCGg -3'
miRNA:   3'- -CGgCGAAG--CGCCGaGUaaa--CCGCGGC- -5'
30156 3' -57.3 NC_006273.1 + 33136 0.73 0.611676
Target:  5'- cGCCGC--CGCGGCuUCAUgUGGCGUg- -3'
miRNA:   3'- -CGGCGaaGCGCCG-AGUAaACCGCGgc -5'
30156 3' -57.3 NC_006273.1 + 34159 0.66 0.931015
Target:  5'- cGCCGCUU--CGGCUCGcgccauaaacgUGGCGUgGa -3'
miRNA:   3'- -CGGCGAAgcGCCGAGUaa---------ACCGCGgC- -5'
30156 3' -57.3 NC_006273.1 + 35969 0.71 0.719161
Target:  5'- cGCaCGCUcgCGCGGCUUcg--GGCGCUu -3'
miRNA:   3'- -CG-GCGAa-GCGCCGAGuaaaCCGCGGc -5'
30156 3' -57.3 NC_006273.1 + 36463 0.66 0.936784
Target:  5'- uGCgGCcuuaGCGGCUCGggcUGGCGUg- -3'
miRNA:   3'- -CGgCGaag-CGCCGAGUaa-ACCGCGgc -5'
30156 3' -57.3 NC_006273.1 + 38083 0.82 0.214441
Target:  5'- aGCCGCcgCGCGGcCUCGgcggcgGGCGCCGa -3'
miRNA:   3'- -CGGCGaaGCGCC-GAGUaaa---CCGCGGC- -5'
30156 3' -57.3 NC_006273.1 + 38597 0.66 0.936784
Target:  5'- aGCCGCagcacagaCGCuGGUUCA---GGUGCCGa -3'
miRNA:   3'- -CGGCGaa------GCG-CCGAGUaaaCCGCGGC- -5'
30156 3' -57.3 NC_006273.1 + 40495 0.68 0.862791
Target:  5'- cGCCGCcggUGCGGgaCAgggcuaagcgccuuUaUGGCGCCGc -3'
miRNA:   3'- -CGGCGaa-GCGCCgaGU--------------AaACCGCGGC- -5'
30156 3' -57.3 NC_006273.1 + 40546 0.74 0.532057
Target:  5'- cGCCGCUUCuGCGGCUUgcuguccacGGCGCUu -3'
miRNA:   3'- -CGGCGAAG-CGCCGAGuaaa-----CCGCGGc -5'
30156 3' -57.3 NC_006273.1 + 44788 0.68 0.872115
Target:  5'- aUCGC--CGCGGC-CGaugGGCGCCGg -3'
miRNA:   3'- cGGCGaaGCGCCGaGUaaaCCGCGGC- -5'
30156 3' -57.3 NC_006273.1 + 46030 0.67 0.904756
Target:  5'- aGCCGCUggaucuggaacUGgGGCUCAUgcgggUGGCcacccacccGCCGa -3'
miRNA:   3'- -CGGCGAa----------GCgCCGAGUAa----ACCG---------CGGC- -5'
30156 3' -57.3 NC_006273.1 + 47823 0.7 0.747468
Target:  5'- cGCCGgUUCGCGGaccugUCGUcgcugggccUcGGCGCCGu -3'
miRNA:   3'- -CGGCgAAGCGCCg----AGUA---------AaCCGCGGC- -5'
30156 3' -57.3 NC_006273.1 + 61576 0.68 0.872115
Target:  5'- gGCCGggucgCGCGGC-CGUUUGGCcaCCGc -3'
miRNA:   3'- -CGGCgaa--GCGCCGaGUAAACCGc-GGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.