Results 1 - 20 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30156 | 3' | -57.3 | NC_006273.1 | + | 194850 | 0.67 | 0.879058 |
Target: 5'- aGCCGCagaaGCGGCggagCGcuugcGGCGCCa -3' miRNA: 3'- -CGGCGaag-CGCCGa---GUaaa--CCGCGGc -5' |
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30156 | 3' | -57.3 | NC_006273.1 | + | 188875 | 0.69 | 0.818236 |
Target: 5'- uCCGCg--GUGGCUUuugUGGCGUCGg -3' miRNA: 3'- cGGCGaagCGCCGAGuaaACCGCGGC- -5' |
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30156 | 3' | -57.3 | NC_006273.1 | + | 149666 | 0.69 | 0.818236 |
Target: 5'- cGCCGCc-CGCGGCgUUAggUGGCuguugcugcgcGCCGg -3' miRNA: 3'- -CGGCGaaGCGCCG-AGUaaACCG-----------CGGC- -5' |
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30156 | 3' | -57.3 | NC_006273.1 | + | 115948 | 0.69 | 0.826457 |
Target: 5'- cGCCGCUcaagCGCGGgUgAcauaGGCGCUGg -3' miRNA: 3'- -CGGCGAa---GCGCCgAgUaaa-CCGCGGC- -5' |
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30156 | 3' | -57.3 | NC_006273.1 | + | 177488 | 0.68 | 0.850109 |
Target: 5'- cGCaCGCUgaacUCGaGGCUCcgggcgugUGGCGCCa -3' miRNA: 3'- -CG-GCGA----AGCgCCGAGuaa-----ACCGCGGc -5' |
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30156 | 3' | -57.3 | NC_006273.1 | + | 557 | 0.68 | 0.862791 |
Target: 5'- cGCCGCcggUGCGGgaCAgggcuaagcgccuuUaUGGCGCCGc -3' miRNA: 3'- -CGGCGaa-GCGCCgaGU--------------AaACCGCGGC- -5' |
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30156 | 3' | -57.3 | NC_006273.1 | + | 137194 | 0.68 | 0.867853 |
Target: 5'- uGCCGCUcaGCGaGCUCGUcgccagcgcgagcgcUcGGCGCCc -3' miRNA: 3'- -CGGCGAagCGC-CGAGUA---------------AaCCGCGGc -5' |
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30156 | 3' | -57.3 | NC_006273.1 | + | 116397 | 0.68 | 0.872115 |
Target: 5'- aGCaGCagUCGCaGGCUg---UGGCGCCGg -3' miRNA: 3'- -CGgCGa-AGCG-CCGAguaaACCGCGGC- -5' |
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30156 | 3' | -57.3 | NC_006273.1 | + | 61576 | 0.68 | 0.872115 |
Target: 5'- gGCCGggucgCGCGGC-CGUUUGGCcaCCGc -3' miRNA: 3'- -CGGCgaa--GCGCCGaGUAAACCGc-GGC- -5' |
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30156 | 3' | -57.3 | NC_006273.1 | + | 196276 | 0.69 | 0.801333 |
Target: 5'- cGCCGCgggacgCGUGGaUCGUgcuggUGGCGaCCGu -3' miRNA: 3'- -CGGCGaa----GCGCCgAGUAa----ACCGC-GGC- -5' |
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30156 | 3' | -57.3 | NC_006273.1 | + | 124189 | 0.7 | 0.756728 |
Target: 5'- cGCCGCcUCGUcuGGCUCGUggccgacgGGC-CCGa -3' miRNA: 3'- -CGGCGaAGCG--CCGAGUAaa------CCGcGGC- -5' |
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30156 | 3' | -57.3 | NC_006273.1 | + | 144422 | 0.7 | 0.738115 |
Target: 5'- cGCCGCggCGgcggaCGGUUCGggUGGCGgCGg -3' miRNA: 3'- -CGGCGaaGC-----GCCGAGUaaACCGCgGC- -5' |
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30156 | 3' | -57.3 | NC_006273.1 | + | 232976 | 0.82 | 0.214441 |
Target: 5'- aGCCGCcgCGCGGcCUCGgcggcgGGCGCCGa -3' miRNA: 3'- -CGGCGaaGCGCC-GAGUaaa---CCGCGGC- -5' |
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30156 | 3' | -57.3 | NC_006273.1 | + | 192651 | 0.76 | 0.416675 |
Target: 5'- cGUCGCUaUGCGGCUCGUcgccgugUGGCGCgGc -3' miRNA: 3'- -CGGCGAaGCGCCGAGUAa------ACCGCGgC- -5' |
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30156 | 3' | -57.3 | NC_006273.1 | + | 139664 | 0.75 | 0.496377 |
Target: 5'- uGUCGCggaCGUGGCUUGUgggacgGGCGCCGu -3' miRNA: 3'- -CGGCGaa-GCGCCGAGUAaa----CCGCGGC- -5' |
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30156 | 3' | -57.3 | NC_006273.1 | + | 608 | 0.74 | 0.532057 |
Target: 5'- cGCCGCUUCuGCGGCUUgcuguccacGGCGCUu -3' miRNA: 3'- -CGGCGAAG-CGCCGAGuaaa-----CCGCGGc -5' |
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30156 | 3' | -57.3 | NC_006273.1 | + | 33136 | 0.73 | 0.611676 |
Target: 5'- cGCCGC--CGCGGCuUCAUgUGGCGUg- -3' miRNA: 3'- -CGGCGaaGCGCCG-AGUAaACCGCGgc -5' |
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30156 | 3' | -57.3 | NC_006273.1 | + | 76536 | 0.72 | 0.670707 |
Target: 5'- cGCCGCUcggCGCGGCgCAcgaggacgUGGCGCg- -3' miRNA: 3'- -CGGCGAa--GCGCCGaGUaa------ACCGCGgc -5' |
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30156 | 3' | -57.3 | NC_006273.1 | + | 35969 | 0.71 | 0.719161 |
Target: 5'- cGCaCGCUcgCGCGGCUUcg--GGCGCUu -3' miRNA: 3'- -CG-GCGAa-GCGCCGAGuaaaCCGCGGc -5' |
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30156 | 3' | -57.3 | NC_006273.1 | + | 149485 | 0.71 | 0.719161 |
Target: 5'- gGUgGUUUCGCGGCgggaCAUUgcggUGGCGCUu -3' miRNA: 3'- -CGgCGAAGCGCCGa---GUAA----ACCGCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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