miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30156 5' -51.3 NC_006273.1 + 81161 0.66 0.997541
Target:  5'- gGCGGCcGCAcga-AGCggUCCACGUAg -3'
miRNA:   3'- gCGCCGaCGUuuagUUG--AGGUGCAUa -5'
30156 5' -51.3 NC_006273.1 + 167322 0.66 0.997541
Target:  5'- aGCGGCgGCAg--CGGCggCCACGg-- -3'
miRNA:   3'- gCGCCGaCGUuuaGUUGa-GGUGCaua -5'
30156 5' -51.3 NC_006273.1 + 36796 0.66 0.997541
Target:  5'- gGCGGCaGCAGGUgCAcgcuGCUCacgACGUGUg -3'
miRNA:   3'- gCGCCGaCGUUUA-GU----UGAGg--UGCAUA- -5'
30156 5' -51.3 NC_006273.1 + 213183 0.66 0.997093
Target:  5'- cCGUGaCUGCGAAUCAuccGCUUCAUGg-- -3'
miRNA:   3'- -GCGCcGACGUUUAGU---UGAGGUGCaua -5'
30156 5' -51.3 NC_006273.1 + 215575 0.66 0.997093
Target:  5'- gGCGuGCUGCA---UAGCUUgGCGUAc -3'
miRNA:   3'- gCGC-CGACGUuuaGUUGAGgUGCAUa -5'
30156 5' -51.3 NC_006273.1 + 32056 0.66 0.996579
Target:  5'- gCGCGGUUGCAAGcgCAGC-CCuCGa-- -3'
miRNA:   3'- -GCGCCGACGUUUa-GUUGaGGuGCaua -5'
30156 5' -51.3 NC_006273.1 + 83996 0.66 0.996579
Target:  5'- cCGCGGCUGUGccauuGAUCcuuGACcgUCACGUAa -3'
miRNA:   3'- -GCGCCGACGU-----UUAG---UUGa-GGUGCAUa -5'
30156 5' -51.3 NC_006273.1 + 98688 0.66 0.996579
Target:  5'- gCGCaGCUGCAc--CAACUcaugaCCGCGUAUc -3'
miRNA:   3'- -GCGcCGACGUuuaGUUGA-----GGUGCAUA- -5'
30156 5' -51.3 NC_006273.1 + 106152 0.66 0.996579
Target:  5'- cCGCGGCggcGCAcgccAUCAAgUUCCACGa-- -3'
miRNA:   3'- -GCGCCGa--CGUu---UAGUU-GAGGUGCaua -5'
30156 5' -51.3 NC_006273.1 + 142429 0.66 0.995992
Target:  5'- gGCGG-UGgAGGcCGACUCCACGUc- -3'
miRNA:   3'- gCGCCgACgUUUaGUUGAGGUGCAua -5'
30156 5' -51.3 NC_006273.1 + 46701 0.66 0.995325
Target:  5'- uGCGGgacCUGCGcAcgCAGCUCgACGUGc -3'
miRNA:   3'- gCGCC---GACGU-UuaGUUGAGgUGCAUa -5'
30156 5' -51.3 NC_006273.1 + 105659 0.66 0.995325
Target:  5'- gGCGGCcuUGCu-GUC--CUCCGCGUGa -3'
miRNA:   3'- gCGCCG--ACGuuUAGuuGAGGUGCAUa -5'
30156 5' -51.3 NC_006273.1 + 163604 0.67 0.994884
Target:  5'- cCGCGGCUGCcaguaacucuuccucGucuucuUCGGCUCCACu--- -3'
miRNA:   3'- -GCGCCGACG---------------Uuu----AGUUGAGGUGcaua -5'
30156 5' -51.3 NC_006273.1 + 71803 0.67 0.994571
Target:  5'- cCGCGGCggugGCGA--CAACgggguuuaCCACGUAg -3'
miRNA:   3'- -GCGCCGa---CGUUuaGUUGa-------GGUGCAUa -5'
30156 5' -51.3 NC_006273.1 + 22255 0.67 0.994571
Target:  5'- gCGcCGGCgaGCGAcgCGGCUCCGcCGUc- -3'
miRNA:   3'- -GC-GCCGa-CGUUuaGUUGAGGU-GCAua -5'
30156 5' -51.3 NC_006273.1 + 86890 0.67 0.993722
Target:  5'- gGCGGCUGCc---CAGCgaaaCCACGg-- -3'
miRNA:   3'- gCGCCGACGuuuaGUUGa---GGUGCaua -5'
30156 5' -51.3 NC_006273.1 + 223618 0.67 0.993722
Target:  5'- uCGUgGGCUGCGGuuggCAGCUCCGgucUGUAa -3'
miRNA:   3'- -GCG-CCGACGUUua--GUUGAGGU---GCAUa -5'
30156 5' -51.3 NC_006273.1 + 29872 0.67 0.992768
Target:  5'- uGCGGCUGUGuuauUCAGaaCCAUGUAc -3'
miRNA:   3'- gCGCCGACGUuu--AGUUgaGGUGCAUa -5'
30156 5' -51.3 NC_006273.1 + 7900 0.67 0.991703
Target:  5'- gGUGGCgGCGGacuGUCAGguaUCCGCGUGg -3'
miRNA:   3'- gCGCCGaCGUU---UAGUUg--AGGUGCAUa -5'
30156 5' -51.3 NC_006273.1 + 80951 0.67 0.990392
Target:  5'- uGCGGCgagucgcccaGCGGGUCGgccagcucgcagaGCUCCugGUAc -3'
miRNA:   3'- gCGCCGa---------CGUUUAGU-------------UGAGGugCAUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.