miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30156 5' -51.3 NC_006273.1 + 151378 1.06 0.018106
Target:  5'- uCGCGGCUGCAAAUCAACUCCACGUAUc -3'
miRNA:   3'- -GCGCCGACGUUUAGUUGAGGUGCAUA- -5'
30156 5' -51.3 NC_006273.1 + 68337 0.81 0.465219
Target:  5'- uGCGGCUGCA---CGACUCCACGg-- -3'
miRNA:   3'- gCGCCGACGUuuaGUUGAGGUGCaua -5'
30156 5' -51.3 NC_006273.1 + 202053 0.75 0.796279
Target:  5'- aCGCGGCUGCcgcaguUCAGCUCgGCGc-- -3'
miRNA:   3'- -GCGCCGACGuuu---AGUUGAGgUGCaua -5'
30156 5' -51.3 NC_006273.1 + 82588 0.75 0.805364
Target:  5'- gGCGGUaGCGGGUCGACuaccuuguccUCCACGUAc -3'
miRNA:   3'- gCGCCGaCGUUUAGUUG----------AGGUGCAUa -5'
30156 5' -51.3 NC_006273.1 + 68361 0.74 0.848189
Target:  5'- uGCaGCUGCAAAUCAGCgCCuCGUGc -3'
miRNA:   3'- gCGcCGACGUUUAGUUGaGGuGCAUa -5'
30156 5' -51.3 NC_006273.1 + 135435 0.74 0.848189
Target:  5'- aGCGGCUGCGcgcUCGuCUCCACGc-- -3'
miRNA:   3'- gCGCCGACGUuu-AGUuGAGGUGCaua -5'
30156 5' -51.3 NC_006273.1 + 150753 0.72 0.905912
Target:  5'- aGCGcGCUGCAGAUCAGCcgCCggGCGcUGUg -3'
miRNA:   3'- gCGC-CGACGUUUAGUUGa-GG--UGC-AUA- -5'
30156 5' -51.3 NC_006273.1 + 139489 0.72 0.917998
Target:  5'- gGUGGCucuUGCGcuucugCAGCUCCGCGUAg -3'
miRNA:   3'- gCGCCG---ACGUuua---GUUGAGGUGCAUa -5'
30156 5' -51.3 NC_006273.1 + 199882 0.71 0.92857
Target:  5'- cCGCGccaaucuGCUGCGcguauGUCAGCUCCACGc-- -3'
miRNA:   3'- -GCGC-------CGACGUu----UAGUUGAGGUGCaua -5'
30156 5' -51.3 NC_006273.1 + 187311 0.71 0.929101
Target:  5'- gGCGGCUGCuc--CAGgUCCGCGg-- -3'
miRNA:   3'- gCGCCGACGuuuaGUUgAGGUGCaua -5'
30156 5' -51.3 NC_006273.1 + 149449 0.71 0.943907
Target:  5'- gGCGGCgccggUGguAGUCcGCUCCACGg-- -3'
miRNA:   3'- gCGCCG-----ACguUUAGuUGAGGUGCaua -5'
30156 5' -51.3 NC_006273.1 + 163511 0.7 0.952562
Target:  5'- gCGCGGCacGCAccugCGACUCCACuGUGg -3'
miRNA:   3'- -GCGCCGa-CGUuua-GUUGAGGUG-CAUa -5'
30156 5' -51.3 NC_006273.1 + 95153 0.7 0.959907
Target:  5'- cCGCGGCcGCGAaacgcuccagcacGUCGugUCgACGUAg -3'
miRNA:   3'- -GCGCCGaCGUU-------------UAGUugAGgUGCAUa -5'
30156 5' -51.3 NC_006273.1 + 190579 0.7 0.96027
Target:  5'- aGCGGCUGcCGAGUCAcgUCCGCc--- -3'
miRNA:   3'- gCGCCGAC-GUUUAGUugAGGUGcaua -5'
30156 5' -51.3 NC_006273.1 + 32766 0.69 0.967067
Target:  5'- uGCGGCaGCGAGUCGGCggCGCGc-- -3'
miRNA:   3'- gCGCCGaCGUUUAGUUGagGUGCaua -5'
30156 5' -51.3 NC_006273.1 + 165680 0.69 0.967067
Target:  5'- gGCGGCgGCAcAUCAAgUCUGCGg-- -3'
miRNA:   3'- gCGCCGaCGUuUAGUUgAGGUGCaua -5'
30156 5' -51.3 NC_006273.1 + 161685 0.69 0.967067
Target:  5'- uGcCGGCUGCGGcggCAcucGCUCCACGg-- -3'
miRNA:   3'- gC-GCCGACGUUua-GU---UGAGGUGCaua -5'
30156 5' -51.3 NC_006273.1 + 148104 0.69 0.967067
Target:  5'- aGCGGCccGCGAGUuauuugugcacCGACUCCAUGUc- -3'
miRNA:   3'- gCGCCGa-CGUUUA-----------GUUGAGGUGCAua -5'
30156 5' -51.3 NC_006273.1 + 70704 0.69 0.972998
Target:  5'- aCGCGuGCUGCGAccgccCUCCACGUu- -3'
miRNA:   3'- -GCGC-CGACGUUuaguuGAGGUGCAua -5'
30156 5' -51.3 NC_006273.1 + 33303 0.69 0.972998
Target:  5'- gCGUGGUUGC---UCAGCUCgGCGUc- -3'
miRNA:   3'- -GCGCCGACGuuuAGUUGAGgUGCAua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.