miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30156 5' -51.3 NC_006273.1 + 93013 0.67 0.990265
Target:  5'- aGCGGCUGCGGAacgCGGCccgggcccgaugCCACGg-- -3'
miRNA:   3'- gCGCCGACGUUUa--GUUGa-----------GGUGCaua -5'
30156 5' -51.3 NC_006273.1 + 152867 0.68 0.989203
Target:  5'- gCGCGGUaGgGAAaCAACgCCGCGUGUa -3'
miRNA:   3'- -GCGCCGaCgUUUaGUUGaGGUGCAUA- -5'
30156 5' -51.3 NC_006273.1 + 213478 0.68 0.989203
Target:  5'- gGCGGCUGCAGuuGUUG--UCCGCGa-- -3'
miRNA:   3'- gCGCCGACGUU--UAGUugAGGUGCaua -5'
30156 5' -51.3 NC_006273.1 + 38471 0.68 0.989203
Target:  5'- aGCGGCUGCGGGUCcgGAgaCCAgGa-- -3'
miRNA:   3'- gCGCCGACGUUUAG--UUgaGGUgCaua -5'
30156 5' -51.3 NC_006273.1 + 38352 0.68 0.98775
Target:  5'- uCGCcGCUGCcgcucGUCAGCUUCACGg-- -3'
miRNA:   3'- -GCGcCGACGuu---UAGUUGAGGUGCaua -5'
30156 5' -51.3 NC_006273.1 + 112693 0.68 0.986151
Target:  5'- uCGCGGCgaGguGGUCAACaCCAUGUu- -3'
miRNA:   3'- -GCGCCGa-CguUUAGUUGaGGUGCAua -5'
30156 5' -51.3 NC_006273.1 + 128034 0.68 0.986151
Target:  5'- cCGCcgGGCUGCAAAUCua-UCCACc--- -3'
miRNA:   3'- -GCG--CCGACGUUUAGuugAGGUGcaua -5'
30156 5' -51.3 NC_006273.1 + 58681 0.68 0.984396
Target:  5'- uGUGGCUGCuauuGGGUCAcagCCGCGUGc -3'
miRNA:   3'- gCGCCGACG----UUUAGUugaGGUGCAUa -5'
30156 5' -51.3 NC_006273.1 + 72315 0.68 0.983838
Target:  5'- gCGCGGCgcugagUGCAAagaggacgaucuugGUgGGCUCUACGUGa -3'
miRNA:   3'- -GCGCCG------ACGUU--------------UAgUUGAGGUGCAUa -5'
30156 5' -51.3 NC_006273.1 + 83583 0.68 0.982477
Target:  5'- uCGCGGC-GCGAG--GACUCCAUGa-- -3'
miRNA:   3'- -GCGCCGaCGUUUagUUGAGGUGCaua -5'
30156 5' -51.3 NC_006273.1 + 49293 0.68 0.982477
Target:  5'- gCGCGGCacgGUAcgGAUCAugaGCUCCAUGg-- -3'
miRNA:   3'- -GCGCCGa--CGU--UUAGU---UGAGGUGCaua -5'
30156 5' -51.3 NC_006273.1 + 95015 0.69 0.980386
Target:  5'- uGuuGCUGgAGAgugaCAGCUCCACGUGa -3'
miRNA:   3'- gCgcCGACgUUUa---GUUGAGGUGCAUa -5'
30156 5' -51.3 NC_006273.1 + 82921 0.69 0.972998
Target:  5'- aGCGGCUGgAGGcgCAGCUgCGCGg-- -3'
miRNA:   3'- gCGCCGACgUUUa-GUUGAgGUGCaua -5'
30156 5' -51.3 NC_006273.1 + 33303 0.69 0.972998
Target:  5'- gCGUGGUUGC---UCAGCUCgGCGUc- -3'
miRNA:   3'- -GCGCCGACGuuuAGUUGAGgUGCAua -5'
30156 5' -51.3 NC_006273.1 + 70704 0.69 0.972998
Target:  5'- aCGCGuGCUGCGAccgccCUCCACGUu- -3'
miRNA:   3'- -GCGC-CGACGUUuaguuGAGGUGCAua -5'
30156 5' -51.3 NC_006273.1 + 148104 0.69 0.967067
Target:  5'- aGCGGCccGCGAGUuauuugugcacCGACUCCAUGUc- -3'
miRNA:   3'- gCGCCGa-CGUUUA-----------GUUGAGGUGCAua -5'
30156 5' -51.3 NC_006273.1 + 165680 0.69 0.967067
Target:  5'- gGCGGCgGCAcAUCAAgUCUGCGg-- -3'
miRNA:   3'- gCGCCGaCGUuUAGUUgAGGUGCaua -5'
30156 5' -51.3 NC_006273.1 + 32766 0.69 0.967067
Target:  5'- uGCGGCaGCGAGUCGGCggCGCGc-- -3'
miRNA:   3'- gCGCCGaCGUUUAGUUGagGUGCaua -5'
30156 5' -51.3 NC_006273.1 + 161685 0.69 0.967067
Target:  5'- uGcCGGCUGCGGcggCAcucGCUCCACGg-- -3'
miRNA:   3'- gC-GCCGACGUUua-GU---UGAGGUGCaua -5'
30156 5' -51.3 NC_006273.1 + 190579 0.7 0.96027
Target:  5'- aGCGGCUGcCGAGUCAcgUCCGCc--- -3'
miRNA:   3'- gCGCCGAC-GUUUAGUugAGGUGcaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.