miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30156 5' -51.3 NC_006273.1 + 7900 0.67 0.991703
Target:  5'- gGUGGCgGCGGacuGUCAGguaUCCGCGUGg -3'
miRNA:   3'- gCGCCGaCGUU---UAGUUg--AGGUGCAUa -5'
30156 5' -51.3 NC_006273.1 + 22255 0.67 0.994571
Target:  5'- gCGcCGGCgaGCGAcgCGGCUCCGcCGUc- -3'
miRNA:   3'- -GC-GCCGa-CGUUuaGUUGAGGU-GCAua -5'
30156 5' -51.3 NC_006273.1 + 29872 0.67 0.992768
Target:  5'- uGCGGCUGUGuuauUCAGaaCCAUGUAc -3'
miRNA:   3'- gCGCCGACGUuu--AGUUgaGGUGCAUa -5'
30156 5' -51.3 NC_006273.1 + 32056 0.66 0.996579
Target:  5'- gCGCGGUUGCAAGcgCAGC-CCuCGa-- -3'
miRNA:   3'- -GCGCCGACGUUUa-GUUGaGGuGCaua -5'
30156 5' -51.3 NC_006273.1 + 32766 0.69 0.967067
Target:  5'- uGCGGCaGCGAGUCGGCggCGCGc-- -3'
miRNA:   3'- gCGCCGaCGUUUAGUUGagGUGCaua -5'
30156 5' -51.3 NC_006273.1 + 33303 0.69 0.972998
Target:  5'- gCGUGGUUGC---UCAGCUCgGCGUc- -3'
miRNA:   3'- -GCGCCGACGuuuAGUUGAGgUGCAua -5'
30156 5' -51.3 NC_006273.1 + 36796 0.66 0.997541
Target:  5'- gGCGGCaGCAGGUgCAcgcuGCUCacgACGUGUg -3'
miRNA:   3'- gCGCCGaCGUUUA-GU----UGAGg--UGCAUA- -5'
30156 5' -51.3 NC_006273.1 + 38352 0.68 0.98775
Target:  5'- uCGCcGCUGCcgcucGUCAGCUUCACGg-- -3'
miRNA:   3'- -GCGcCGACGuu---UAGUUGAGGUGCaua -5'
30156 5' -51.3 NC_006273.1 + 38471 0.68 0.989203
Target:  5'- aGCGGCUGCGGGUCcgGAgaCCAgGa-- -3'
miRNA:   3'- gCGCCGACGUUUAG--UUgaGGUgCaua -5'
30156 5' -51.3 NC_006273.1 + 46701 0.66 0.995325
Target:  5'- uGCGGgacCUGCGcAcgCAGCUCgACGUGc -3'
miRNA:   3'- gCGCC---GACGU-UuaGUUGAGgUGCAUa -5'
30156 5' -51.3 NC_006273.1 + 49293 0.68 0.982477
Target:  5'- gCGCGGCacgGUAcgGAUCAugaGCUCCAUGg-- -3'
miRNA:   3'- -GCGCCGa--CGU--UUAGU---UGAGGUGCaua -5'
30156 5' -51.3 NC_006273.1 + 58681 0.68 0.984396
Target:  5'- uGUGGCUGCuauuGGGUCAcagCCGCGUGc -3'
miRNA:   3'- gCGCCGACG----UUUAGUugaGGUGCAUa -5'
30156 5' -51.3 NC_006273.1 + 68337 0.81 0.465219
Target:  5'- uGCGGCUGCA---CGACUCCACGg-- -3'
miRNA:   3'- gCGCCGACGUuuaGUUGAGGUGCaua -5'
30156 5' -51.3 NC_006273.1 + 68361 0.74 0.848189
Target:  5'- uGCaGCUGCAAAUCAGCgCCuCGUGc -3'
miRNA:   3'- gCGcCGACGUUUAGUUGaGGuGCAUa -5'
30156 5' -51.3 NC_006273.1 + 70704 0.69 0.972998
Target:  5'- aCGCGuGCUGCGAccgccCUCCACGUu- -3'
miRNA:   3'- -GCGC-CGACGUUuaguuGAGGUGCAua -5'
30156 5' -51.3 NC_006273.1 + 71803 0.67 0.994571
Target:  5'- cCGCGGCggugGCGA--CAACgggguuuaCCACGUAg -3'
miRNA:   3'- -GCGCCGa---CGUUuaGUUGa-------GGUGCAUa -5'
30156 5' -51.3 NC_006273.1 + 72315 0.68 0.983838
Target:  5'- gCGCGGCgcugagUGCAAagaggacgaucuugGUgGGCUCUACGUGa -3'
miRNA:   3'- -GCGCCG------ACGUU--------------UAgUUGAGGUGCAUa -5'
30156 5' -51.3 NC_006273.1 + 80951 0.67 0.990392
Target:  5'- uGCGGCgagucgcccaGCGGGUCGgccagcucgcagaGCUCCugGUAc -3'
miRNA:   3'- gCGCCGa---------CGUUUAGU-------------UGAGGugCAUa -5'
30156 5' -51.3 NC_006273.1 + 81161 0.66 0.997541
Target:  5'- gGCGGCcGCAcga-AGCggUCCACGUAg -3'
miRNA:   3'- gCGCCGaCGUuuagUUG--AGGUGCAUa -5'
30156 5' -51.3 NC_006273.1 + 82588 0.75 0.805364
Target:  5'- gGCGGUaGCGGGUCGACuaccuuguccUCCACGUAc -3'
miRNA:   3'- gCGCCGaCGUUUAGUUG----------AGGUGCAUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.