Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30156 | 5' | -51.3 | NC_006273.1 | + | 163604 | 0.67 | 0.994884 |
Target: 5'- cCGCGGCUGCcaguaacucuuccucGucuucuUCGGCUCCACu--- -3' miRNA: 3'- -GCGCCGACG---------------Uuu----AGUUGAGGUGcaua -5' |
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30156 | 5' | -51.3 | NC_006273.1 | + | 49293 | 0.68 | 0.982477 |
Target: 5'- gCGCGGCacgGUAcgGAUCAugaGCUCCAUGg-- -3' miRNA: 3'- -GCGCCGa--CGU--UUAGU---UGAGGUGCaua -5' |
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30156 | 5' | -51.3 | NC_006273.1 | + | 72315 | 0.68 | 0.983838 |
Target: 5'- gCGCGGCgcugagUGCAAagaggacgaucuugGUgGGCUCUACGUGa -3' miRNA: 3'- -GCGCCG------ACGUU--------------UAgUUGAGGUGCAUa -5' |
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30156 | 5' | -51.3 | NC_006273.1 | + | 112693 | 0.68 | 0.986151 |
Target: 5'- uCGCGGCgaGguGGUCAACaCCAUGUu- -3' miRNA: 3'- -GCGCCGa-CguUUAGUUGaGGUGCAua -5' |
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30156 | 5' | -51.3 | NC_006273.1 | + | 38352 | 0.68 | 0.98775 |
Target: 5'- uCGCcGCUGCcgcucGUCAGCUUCACGg-- -3' miRNA: 3'- -GCGcCGACGuu---UAGUUGAGGUGCaua -5' |
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30156 | 5' | -51.3 | NC_006273.1 | + | 38471 | 0.68 | 0.989203 |
Target: 5'- aGCGGCUGCGGGUCcgGAgaCCAgGa-- -3' miRNA: 3'- gCGCCGACGUUUAG--UUgaGGUgCaua -5' |
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30156 | 5' | -51.3 | NC_006273.1 | + | 152867 | 0.68 | 0.989203 |
Target: 5'- gCGCGGUaGgGAAaCAACgCCGCGUGUa -3' miRNA: 3'- -GCGCCGaCgUUUaGUUGaGGUGCAUA- -5' |
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30156 | 5' | -51.3 | NC_006273.1 | + | 223618 | 0.67 | 0.993722 |
Target: 5'- uCGUgGGCUGCGGuuggCAGCUCCGgucUGUAa -3' miRNA: 3'- -GCG-CCGACGUUua--GUUGAGGU---GCAUa -5' |
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30156 | 5' | -51.3 | NC_006273.1 | + | 22255 | 0.67 | 0.994571 |
Target: 5'- gCGcCGGCgaGCGAcgCGGCUCCGcCGUc- -3' miRNA: 3'- -GC-GCCGa-CGUUuaGUUGAGGU-GCAua -5' |
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30156 | 5' | -51.3 | NC_006273.1 | + | 70704 | 0.69 | 0.972998 |
Target: 5'- aCGCGuGCUGCGAccgccCUCCACGUu- -3' miRNA: 3'- -GCGC-CGACGUUuaguuGAGGUGCAua -5' |
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30156 | 5' | -51.3 | NC_006273.1 | + | 33303 | 0.69 | 0.972998 |
Target: 5'- gCGUGGUUGC---UCAGCUCgGCGUc- -3' miRNA: 3'- -GCGCCGACGuuuAGUUGAGgUGCAua -5' |
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30156 | 5' | -51.3 | NC_006273.1 | + | 32766 | 0.69 | 0.967067 |
Target: 5'- uGCGGCaGCGAGUCGGCggCGCGc-- -3' miRNA: 3'- gCGCCGaCGUUUAGUUGagGUGCaua -5' |
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30156 | 5' | -51.3 | NC_006273.1 | + | 82588 | 0.75 | 0.805364 |
Target: 5'- gGCGGUaGCGGGUCGACuaccuuguccUCCACGUAc -3' miRNA: 3'- gCGCCGaCGUUUAGUUG----------AGGUGCAUa -5' |
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30156 | 5' | -51.3 | NC_006273.1 | + | 135435 | 0.74 | 0.848189 |
Target: 5'- aGCGGCUGCGcgcUCGuCUCCACGc-- -3' miRNA: 3'- gCGCCGACGUuu-AGUuGAGGUGCaua -5' |
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30156 | 5' | -51.3 | NC_006273.1 | + | 150753 | 0.72 | 0.905912 |
Target: 5'- aGCGcGCUGCAGAUCAGCcgCCggGCGcUGUg -3' miRNA: 3'- gCGC-CGACGUUUAGUUGa-GG--UGC-AUA- -5' |
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30156 | 5' | -51.3 | NC_006273.1 | + | 139489 | 0.72 | 0.917998 |
Target: 5'- gGUGGCucuUGCGcuucugCAGCUCCGCGUAg -3' miRNA: 3'- gCGCCG---ACGUuua---GUUGAGGUGCAUa -5' |
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30156 | 5' | -51.3 | NC_006273.1 | + | 149449 | 0.71 | 0.943907 |
Target: 5'- gGCGGCgccggUGguAGUCcGCUCCACGg-- -3' miRNA: 3'- gCGCCG-----ACguUUAGuUGAGGUGCaua -5' |
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30156 | 5' | -51.3 | NC_006273.1 | + | 190579 | 0.7 | 0.96027 |
Target: 5'- aGCGGCUGcCGAGUCAcgUCCGCc--- -3' miRNA: 3'- gCGCCGAC-GUUUAGUugAGGUGcaua -5' |
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30156 | 5' | -51.3 | NC_006273.1 | + | 161685 | 0.69 | 0.967067 |
Target: 5'- uGcCGGCUGCGGcggCAcucGCUCCACGg-- -3' miRNA: 3'- gC-GCCGACGUUua-GU---UGAGGUGCaua -5' |
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30156 | 5' | -51.3 | NC_006273.1 | + | 165680 | 0.69 | 0.967067 |
Target: 5'- gGCGGCgGCAcAUCAAgUCUGCGg-- -3' miRNA: 3'- gCGCCGaCGUuUAGUUgAGGUGCaua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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