miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30157 3' -53.6 NC_006273.1 + 177694 0.66 0.991539
Target:  5'- cGCCGacGCugGcGCUGCGGcu-GAAGCc -3'
miRNA:   3'- -CGGCc-CGugCuUGACGCUcuuCUUCG- -5'
30157 3' -53.6 NC_006273.1 + 124252 0.66 0.991539
Target:  5'- uGCUuGGUgucuGCGGGC-GCGAGAGGGccGGCu -3'
miRNA:   3'- -CGGcCCG----UGCUUGaCGCUCUUCU--UCG- -5'
30157 3' -53.6 NC_006273.1 + 112275 0.66 0.991539
Target:  5'- aCCGGGUGCGcaaacgguauCUGCGuc-AGGAGCu -3'
miRNA:   3'- cGGCCCGUGCuu--------GACGCucuUCUUCG- -5'
30157 3' -53.6 NC_006273.1 + 57859 0.66 0.991539
Target:  5'- aGCCGcGC-CGAGCcaGCGGGcccccgcuAAGAGGCa -3'
miRNA:   3'- -CGGCcCGuGCUUGa-CGCUC--------UUCUUCG- -5'
30157 3' -53.6 NC_006273.1 + 186147 0.66 0.991539
Target:  5'- cGCUGGGcCACGAGgUGCcAGAAc--GCa -3'
miRNA:   3'- -CGGCCC-GUGCUUgACGcUCUUcuuCG- -5'
30157 3' -53.6 NC_006273.1 + 86022 0.66 0.991428
Target:  5'- cGCCGGGCGCGcucucuugaacacGACagGUGGGAcccGGAucgucGCc -3'
miRNA:   3'- -CGGCCCGUGC-------------UUGa-CGCUCU---UCUu----CG- -5'
30157 3' -53.6 NC_006273.1 + 110282 0.66 0.990376
Target:  5'- uGUCGGGCugcuGCGAACagugcuaaUGCGuAGgcGAAGg -3'
miRNA:   3'- -CGGCCCG----UGCUUG--------ACGC-UCuuCUUCg -5'
30157 3' -53.6 NC_006273.1 + 115592 0.66 0.990376
Target:  5'- -gUGGGUGCGGACggUGCGGGugccGGGAcAGCg -3'
miRNA:   3'- cgGCCCGUGCUUG--ACGCUC----UUCU-UCG- -5'
30157 3' -53.6 NC_006273.1 + 95623 0.66 0.990376
Target:  5'- -aCGGGgA--AACUGaGAGGAGAGGCg -3'
miRNA:   3'- cgGCCCgUgcUUGACgCUCUUCUUCG- -5'
30157 3' -53.6 NC_006273.1 + 164871 0.66 0.990376
Target:  5'- cCCGGGaGCGuuggaUGCG-GAGGAAGUc -3'
miRNA:   3'- cGGCCCgUGCuug--ACGCuCUUCUUCG- -5'
30157 3' -53.6 NC_006273.1 + 229790 0.66 0.990376
Target:  5'- uGCCGGGaUACGAGCacgcuucCGAGGGcuGGCg -3'
miRNA:   3'- -CGGCCC-GUGCUUGac-----GCUCUUcuUCG- -5'
30157 3' -53.6 NC_006273.1 + 84920 0.66 0.990376
Target:  5'- cGCUGGGaACGGGgaGaggaaGAGuGAGAAGCg -3'
miRNA:   3'- -CGGCCCgUGCUUgaCg----CUC-UUCUUCG- -5'
30157 3' -53.6 NC_006273.1 + 110560 0.66 0.989091
Target:  5'- cGCUGGcGCGCGAgaaccugcugacGCUGgGccAGuGGGAGCu -3'
miRNA:   3'- -CGGCC-CGUGCU------------UGACgC--UCuUCUUCG- -5'
30157 3' -53.6 NC_006273.1 + 76544 0.66 0.989091
Target:  5'- gGCgCGGcGCACGAggacguggcgcGCUGUG-GAcucGAAGCg -3'
miRNA:   3'- -CG-GCC-CGUGCU-----------UGACGCuCUu--CUUCG- -5'
30157 3' -53.6 NC_006273.1 + 190042 0.66 0.989091
Target:  5'- -aCGGGCugGugggacuccuccGACgGCGGGggGAcgaacaccgucGGCg -3'
miRNA:   3'- cgGCCCGugC------------UUGaCGCUCuuCU-----------UCG- -5'
30157 3' -53.6 NC_006273.1 + 147978 0.66 0.989091
Target:  5'- uGuuGGcGCGCGugUUGCuAGAAGGcAGCg -3'
miRNA:   3'- -CggCC-CGUGCuuGACGcUCUUCU-UCG- -5'
30157 3' -53.6 NC_006273.1 + 147562 0.66 0.987676
Target:  5'- cGUC-GGCGgGAGCaGCGGGGgcggcGGggGCa -3'
miRNA:   3'- -CGGcCCGUgCUUGaCGCUCU-----UCuuCG- -5'
30157 3' -53.6 NC_006273.1 + 192724 0.66 0.987676
Target:  5'- -aCGGGCcgucucaucAUGAACgUGCGcaggucuuGGGAGGAGCu -3'
miRNA:   3'- cgGCCCG---------UGCUUG-ACGC--------UCUUCUUCG- -5'
30157 3' -53.6 NC_006273.1 + 4946 0.66 0.987676
Target:  5'- cGCCGGaGCA---GCaGCGAucuGggGAAGCc -3'
miRNA:   3'- -CGGCC-CGUgcuUGaCGCU---CuuCUUCG- -5'
30157 3' -53.6 NC_006273.1 + 146932 0.66 0.987676
Target:  5'- aGCUugGGGUGCaGAC-GCGAGAAGAaaaagagugAGCg -3'
miRNA:   3'- -CGG--CCCGUGcUUGaCGCUCUUCU---------UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.