miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30157 3' -53.6 NC_006273.1 + 151661 1.14 0.004097
Target:  5'- uGCCGGGCACGAACUGCGAGAAGAAGCu -3'
miRNA:   3'- -CGGCCCGUGCUUGACGCUCUUCUUCG- -5'
30157 3' -53.6 NC_006273.1 + 214654 0.81 0.405708
Target:  5'- -aUGGGCACGAGCacgGUGAGaAAGAAGCu -3'
miRNA:   3'- cgGCCCGUGCUUGa--CGCUC-UUCUUCG- -5'
30157 3' -53.6 NC_006273.1 + 100334 0.8 0.449356
Target:  5'- gGCgCGGuGCAUGggUUGCGAGAAGGucucgGGCg -3'
miRNA:   3'- -CG-GCC-CGUGCuuGACGCUCUUCU-----UCG- -5'
30157 3' -53.6 NC_006273.1 + 36867 0.77 0.593187
Target:  5'- aGCCGGuCGCGGACcGCGgagucgGGGAGAAGCu -3'
miRNA:   3'- -CGGCCcGUGCUUGaCGC------UCUUCUUCG- -5'
30157 3' -53.6 NC_006273.1 + 122781 0.76 0.633374
Target:  5'- cCCGGGCaACGGcugcucggcgcACUGCGccagccagguAGAAGAAGCa -3'
miRNA:   3'- cGGCCCG-UGCU-----------UGACGC----------UCUUCUUCG- -5'
30157 3' -53.6 NC_006273.1 + 149576 0.76 0.657508
Target:  5'- gGCCGGGCcCGuggaggaggcaagaaAGCUGUagGGGGAGggGCg -3'
miRNA:   3'- -CGGCCCGuGC---------------UUGACG--CUCUUCuuCG- -5'
30157 3' -53.6 NC_006273.1 + 149656 0.75 0.703351
Target:  5'- -aCGGGUGCGcAACUGCGAcGAAcacGAAGCu -3'
miRNA:   3'- cgGCCCGUGC-UUGACGCU-CUU---CUUCG- -5'
30157 3' -53.6 NC_006273.1 + 205364 0.75 0.721975
Target:  5'- cGCCGGGCugGAaccuaguGCUGC-AGGAGAu-- -3'
miRNA:   3'- -CGGCCCGugCU-------UGACGcUCUUCUucg -5'
30157 3' -53.6 NC_006273.1 + 40959 0.74 0.732638
Target:  5'- cGCCGGGgACGggggGugUGCGGGGacgGGggGUg -3'
miRNA:   3'- -CGGCCCgUGC----UugACGCUCU---UCuuCG- -5'
30157 3' -53.6 NC_006273.1 + 1021 0.74 0.732638
Target:  5'- cGCCGGGgACGggggGugUGCGGGGacgGGggGUg -3'
miRNA:   3'- -CGGCCCgUGC----UugACGCUCU---UCuuCG- -5'
30157 3' -53.6 NC_006273.1 + 79955 0.74 0.732638
Target:  5'- cGCCGGGCACGGcgGCgGUaGAGAuGAuAGCg -3'
miRNA:   3'- -CGGCCCGUGCU--UGaCG-CUCUuCU-UCG- -5'
30157 3' -53.6 NC_006273.1 + 141153 0.74 0.761166
Target:  5'- gGCCGGaacccugcCGCGGACUGCGccGGGggGCg -3'
miRNA:   3'- -CGGCCc-------GUGCUUGACGCucUUCuuCG- -5'
30157 3' -53.6 NC_006273.1 + 140935 0.74 0.770466
Target:  5'- gGCCGGGCcguCGGAUggggggucgaGCGGGggGAGGg -3'
miRNA:   3'- -CGGCCCGu--GCUUGa---------CGCUCuuCUUCg -5'
30157 3' -53.6 NC_006273.1 + 35305 0.73 0.776905
Target:  5'- uGCCaGGUACGGACUcuaacacccaggccGCGGGAuauggacucGGAGGCg -3'
miRNA:   3'- -CGGcCCGUGCUUGA--------------CGCUCU---------UCUUCG- -5'
30157 3' -53.6 NC_006273.1 + 103476 0.73 0.779647
Target:  5'- aGCUGGcGCGCcAGCUGCGuggaggugccGAAGAAGCc -3'
miRNA:   3'- -CGGCC-CGUGcUUGACGCu---------CUUCUUCG- -5'
30157 3' -53.6 NC_006273.1 + 1680 0.73 0.797616
Target:  5'- aGCCGGcGCucCGAcagacguuGCUGCGcgccGAGGAGGCg -3'
miRNA:   3'- -CGGCC-CGu-GCU--------UGACGCu---CUUCUUCG- -5'
30157 3' -53.6 NC_006273.1 + 140829 0.73 0.806388
Target:  5'- cCCGGGC-CGGAgccCGGGGAGGAGCg -3'
miRNA:   3'- cGGCCCGuGCUUgacGCUCUUCUUCG- -5'
30157 3' -53.6 NC_006273.1 + 90928 0.73 0.806388
Target:  5'- cGCCGGcGCGCGAGCccguguagUGCGAGccGccGCc -3'
miRNA:   3'- -CGGCC-CGUGCUUG--------ACGCUCuuCuuCG- -5'
30157 3' -53.6 NC_006273.1 + 64253 0.73 0.815007
Target:  5'- -gCGGGCACGGGCguugcgGCGgcGGccGAAGCg -3'
miRNA:   3'- cgGCCCGUGCUUGa-----CGC--UCuuCUUCG- -5'
30157 3' -53.6 NC_006273.1 + 193770 0.73 0.815007
Target:  5'- aGCCagGGGCugGGugUGCGAaaccGGuguGGAAGCc -3'
miRNA:   3'- -CGG--CCCGugCUugACGCU----CU---UCUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.