miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30157 3' -53.6 NC_006273.1 + 143683 0.66 0.987527
Target:  5'- gGgCGGGUGCGucgGCUaGCGGucuggcuGGAGAGGCu -3'
miRNA:   3'- -CgGCCCGUGCu--UGA-CGCU-------CUUCUUCG- -5'
30157 3' -53.6 NC_006273.1 + 7748 0.66 0.986762
Target:  5'- aGCgGGGCGucCGAAg-GCGAGGAuggcauggucucgccGGAGCg -3'
miRNA:   3'- -CGgCCCGU--GCUUgaCGCUCUU---------------CUUCG- -5'
30157 3' -53.6 NC_006273.1 + 196821 0.66 0.986124
Target:  5'- cGCUGGGCGCGGuGCUGCccgcGcGGuGGCu -3'
miRNA:   3'- -CGGCCCGUGCU-UGACGcu--CuUCuUCG- -5'
30157 3' -53.6 NC_006273.1 + 1929 0.66 0.986124
Target:  5'- cGCUGGGCGCGGuGCUGCccgcGcGGuGGCu -3'
miRNA:   3'- -CGGCCCGUGCU-UGACGcu--CuUCuUCG- -5'
30157 3' -53.6 NC_006273.1 + 1809 0.66 0.986124
Target:  5'- uGCUGGGCGCGug--GC-AGGAGcuGGCg -3'
miRNA:   3'- -CGGCCCGUGCuugaCGcUCUUCu-UCG- -5'
30157 3' -53.6 NC_006273.1 + 50053 0.66 0.986124
Target:  5'- -gCGGGCAUcccggGCGAGAAGcuGCg -3'
miRNA:   3'- cgGCCCGUGcuugaCGCUCUUCuuCG- -5'
30157 3' -53.6 NC_006273.1 + 198565 0.66 0.986124
Target:  5'- uGCCaaGGGCAUGAuccGCUGCGAcccGguGCa -3'
miRNA:   3'- -CGG--CCCGUGCU---UGACGCUcuuCuuCG- -5'
30157 3' -53.6 NC_006273.1 + 17414 0.66 0.986124
Target:  5'- cGCCGGcCACGAgagcgaugacgACgaGUGGGAAGAccuaGGCu -3'
miRNA:   3'- -CGGCCcGUGCU-----------UGa-CGCUCUUCU----UCG- -5'
30157 3' -53.6 NC_006273.1 + 196701 0.66 0.986124
Target:  5'- uGCUGGGCGCGug--GC-AGGAGcuGGCg -3'
miRNA:   3'- -CGGCCCGUGCuugaCGcUCUUCu-UCG- -5'
30157 3' -53.6 NC_006273.1 + 118676 0.66 0.986124
Target:  5'- -gCGGGguCG-ACUGCGuGGggugcuggaaguGGAAGCg -3'
miRNA:   3'- cgGCCCguGCuUGACGCuCU------------UCUUCG- -5'
30157 3' -53.6 NC_006273.1 + 117987 0.66 0.986124
Target:  5'- gGCCGGGCACGAAa-GCGucuAAaAAGUc -3'
miRNA:   3'- -CGGCCCGUGCUUgaCGCuc-UUcUUCG- -5'
30157 3' -53.6 NC_006273.1 + 117020 0.66 0.985961
Target:  5'- aGCCGGGCAgGAAgaagaacCUGCcgucGAGGGcccGGCc -3'
miRNA:   3'- -CGGCCCGUgCUU-------GACGcu--CUUCU---UCG- -5'
30157 3' -53.6 NC_006273.1 + 147908 0.66 0.984426
Target:  5'- cCCGGGC-CGc-CUGaggaaGGGGAGGAGUg -3'
miRNA:   3'- cGGCCCGuGCuuGACg----CUCUUCUUCG- -5'
30157 3' -53.6 NC_006273.1 + 197262 0.66 0.984426
Target:  5'- cGCC-GGCcCGAGCgcgcCGGGGAGAAGa -3'
miRNA:   3'- -CGGcCCGuGCUUGac--GCUCUUCUUCg -5'
30157 3' -53.6 NC_006273.1 + 103177 0.66 0.984068
Target:  5'- uGUCGGGUACGuGACggagcaggucgcGCGGaAAGAGGCu -3'
miRNA:   3'- -CGGCCCGUGC-UUGa-----------CGCUcUUCUUCG- -5'
30157 3' -53.6 NC_006273.1 + 141086 0.66 0.983704
Target:  5'- gGCCGGGgAgGGugggggguaggGCGGGAGGcAGGCg -3'
miRNA:   3'- -CGGCCCgUgCUuga--------CGCUCUUC-UUCG- -5'
30157 3' -53.6 NC_006273.1 + 202005 0.67 0.982574
Target:  5'- cGCCuacucuGGCACucGCUGCGAcacGggGAcGCg -3'
miRNA:   3'- -CGGc-----CCGUGcuUGACGCU---CuuCUuCG- -5'
30157 3' -53.6 NC_006273.1 + 140194 0.67 0.982574
Target:  5'- gGCUGGGCGgcCGA--UGgGGGGAGggGa -3'
miRNA:   3'- -CGGCCCGU--GCUugACgCUCUUCuuCg -5'
30157 3' -53.6 NC_006273.1 + 175200 0.67 0.982574
Target:  5'- gGCC-GGCGCGAccaggauggaGCUGgacaguguCGAGGAGGAGg -3'
miRNA:   3'- -CGGcCCGUGCU----------UGAC--------GCUCUUCUUCg -5'
30157 3' -53.6 NC_006273.1 + 96019 0.67 0.982574
Target:  5'- aGUCuGGC-CGAGCgGCGccaucuuggAGGAGggGCg -3'
miRNA:   3'- -CGGcCCGuGCUUGaCGC---------UCUUCuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.