miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30157 3' -53.6 NC_006273.1 + 836 0.7 0.915834
Target:  5'- cGCCGGGgACGGGgugUUGCGGGcgcucGGggGUu -3'
miRNA:   3'- -CGGCCCgUGCUU---GACGCUCu----UCuuCG- -5'
30157 3' -53.6 NC_006273.1 + 1021 0.74 0.732638
Target:  5'- cGCCGGGgACGggggGugUGCGGGGacgGGggGUg -3'
miRNA:   3'- -CGGCCCgUGC----UugACGCUCU---UCuuCG- -5'
30157 3' -53.6 NC_006273.1 + 1074 0.69 0.945875
Target:  5'- -gCGGGgACGggggGugUGCGGGGAcGggGCg -3'
miRNA:   3'- cgGCCCgUGC----UugACGCUCUU-CuuCG- -5'
30157 3' -53.6 NC_006273.1 + 1086 0.67 0.976024
Target:  5'- cGCCGGGCGCcc-CUcCGAGuAGcGGCa -3'
miRNA:   3'- -CGGCCCGUGcuuGAcGCUCuUCuUCG- -5'
30157 3' -53.6 NC_006273.1 + 1128 0.67 0.978381
Target:  5'- uGCCGGGgACGGGggacucUUGCGGcGggGAcGGUg -3'
miRNA:   3'- -CGGCCCgUGCUU------GACGCU-CuuCU-UCG- -5'
30157 3' -53.6 NC_006273.1 + 1680 0.73 0.797616
Target:  5'- aGCCGGcGCucCGAcagacguuGCUGCGcgccGAGGAGGCg -3'
miRNA:   3'- -CGGCC-CGu-GCU--------UGACGCu---CUUCUUCG- -5'
30157 3' -53.6 NC_006273.1 + 1809 0.66 0.986124
Target:  5'- uGCUGGGCGCGug--GC-AGGAGcuGGCg -3'
miRNA:   3'- -CGGCCCGUGCuugaCGcUCUUCu-UCG- -5'
30157 3' -53.6 NC_006273.1 + 1929 0.66 0.986124
Target:  5'- cGCUGGGCGCGGuGCUGCccgcGcGGuGGCu -3'
miRNA:   3'- -CGGCCCGUGCU-UGACGcu--CuUCuUCG- -5'
30157 3' -53.6 NC_006273.1 + 2217 0.68 0.96783
Target:  5'- cGCUGGGCACGAc--GCGGuGAAcguGGCg -3'
miRNA:   3'- -CGGCCCGUGCUugaCGCU-CUUcu-UCG- -5'
30157 3' -53.6 NC_006273.1 + 2384 0.7 0.92677
Target:  5'- cGCUGGcGCugGGGC-GCGAGucGgcGCc -3'
miRNA:   3'- -CGGCC-CGugCUUGaCGCUCuuCuuCG- -5'
30157 3' -53.6 NC_006273.1 + 4946 0.66 0.987676
Target:  5'- cGCCGGaGCA---GCaGCGAucuGggGAAGCc -3'
miRNA:   3'- -CGGCC-CGUgcuUGaCGCU---CuuCUUCG- -5'
30157 3' -53.6 NC_006273.1 + 5005 0.7 0.91002
Target:  5'- uGCCGaGCGCGGGCUgacGCGuuGAGuAAGCg -3'
miRNA:   3'- -CGGCcCGUGCUUGA---CGCucUUC-UUCG- -5'
30157 3' -53.6 NC_006273.1 + 7748 0.66 0.986762
Target:  5'- aGCgGGGCGucCGAAg-GCGAGGAuggcauggucucgccGGAGCg -3'
miRNA:   3'- -CGgCCCGU--GCUUgaCGCUCUU---------------CUUCG- -5'
30157 3' -53.6 NC_006273.1 + 14007 0.7 0.91002
Target:  5'- gGgCGGGCGCGGGgUgGCGgAGcGGGGAGCg -3'
miRNA:   3'- -CgGCCCGUGCUUgA-CGC-UC-UUCUUCG- -5'
30157 3' -53.6 NC_006273.1 + 16902 0.69 0.940988
Target:  5'- gGCCaGGCugGAacgcaacggagGCUGCGuacacauGGgcGAGGCg -3'
miRNA:   3'- -CGGcCCGugCU-----------UGACGC-------UCuuCUUCG- -5'
30157 3' -53.6 NC_006273.1 + 17414 0.66 0.986124
Target:  5'- cGCCGGcCACGAgagcgaugacgACgaGUGGGAAGAccuaGGCu -3'
miRNA:   3'- -CGGCCcGUGCU-----------UGa-CGCUCUUCU----UCG- -5'
30157 3' -53.6 NC_006273.1 + 19211 0.71 0.877579
Target:  5'- aCCGGGCgGCGAuaGCaGCGAcGAGGAcgaaAGCg -3'
miRNA:   3'- cGGCCCG-UGCU--UGaCGCU-CUUCU----UCG- -5'
30157 3' -53.6 NC_006273.1 + 21317 0.71 0.87044
Target:  5'- aGCCGGuGCGCGAccgcaACcGCGAGcGGAacccgGGCu -3'
miRNA:   3'- -CGGCC-CGUGCU-----UGaCGCUCuUCU-----UCG- -5'
30157 3' -53.6 NC_006273.1 + 29102 0.68 0.970472
Target:  5'- cGCCGuGCuCGAGCgaagggugGCGgagggccAGAAGAGGCg -3'
miRNA:   3'- -CGGCcCGuGCUUGa-------CGC-------UCUUCUUCG- -5'
30157 3' -53.6 NC_006273.1 + 35305 0.73 0.776905
Target:  5'- uGCCaGGUACGGACUcuaacacccaggccGCGGGAuauggacucGGAGGCg -3'
miRNA:   3'- -CGGcCCGUGCUUGA--------------CGCUCU---------UCUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.