miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30157 3' -53.6 NC_006273.1 + 72676 0.69 0.931892
Target:  5'- uGCUaGGCACGGcgaGCUgGUGGGguGAAGCa -3'
miRNA:   3'- -CGGcCCGUGCU---UGA-CGCUCuuCUUCG- -5'
30157 3' -53.6 NC_006273.1 + 63765 0.71 0.87044
Target:  5'- gGCCGGGCGCGccucucggagGACgGCGuGAcgguguacguGGAGGUa -3'
miRNA:   3'- -CGGCCCGUGC----------UUGaCGCuCU----------UCUUCG- -5'
30157 3' -53.6 NC_006273.1 + 39594 0.71 0.884507
Target:  5'- aGCgCGGGUACGAcCUGCGAuuuAGccGCa -3'
miRNA:   3'- -CG-GCCCGUGCUuGACGCUcu-UCuuCG- -5'
30157 3' -53.6 NC_006273.1 + 105066 0.7 0.91002
Target:  5'- gGCCugguGGaCAUGGACUGUGAGAA-AAGCg -3'
miRNA:   3'- -CGGc---CC-GUGCUUGACGCUCUUcUUCG- -5'
30157 3' -53.6 NC_006273.1 + 5005 0.7 0.91002
Target:  5'- uGCCGaGCGCGGGCUgacGCGuuGAGuAAGCg -3'
miRNA:   3'- -CGGCcCGUGCUUGA---CGCucUUC-UUCG- -5'
30157 3' -53.6 NC_006273.1 + 216332 0.7 0.91002
Target:  5'- cGCCGGcaGCGuuuCGAcGCUGUGAGAGGGgaaGGCc -3'
miRNA:   3'- -CGGCC--CGU---GCU-UGACGCUCUUCU---UCG- -5'
30157 3' -53.6 NC_006273.1 + 836 0.7 0.915834
Target:  5'- cGCCGGGgACGGGgugUUGCGGGcgcucGGggGUu -3'
miRNA:   3'- -CGGCCCgUGCUU---GACGCUCu----UCuuCG- -5'
30157 3' -53.6 NC_006273.1 + 113234 0.7 0.921417
Target:  5'- uGCCGGGCuACGGGa--CGAuaacGGAGGAGCu -3'
miRNA:   3'- -CGGCCCG-UGCUUgacGCU----CUUCUUCG- -5'
30157 3' -53.6 NC_006273.1 + 197277 0.7 0.92677
Target:  5'- cGCUGGcGCugGGGC-GCGAGucGgcGCc -3'
miRNA:   3'- -CGGCC-CGugCUUGaCGCUCuuCuuCG- -5'
30157 3' -53.6 NC_006273.1 + 21317 0.71 0.87044
Target:  5'- aGCCGGuGCGCGAccgcaACcGCGAGcGGAacccgGGCu -3'
miRNA:   3'- -CGGCC-CGUGCU-----UGaCGCUCuUCU-----UCG- -5'
30157 3' -53.6 NC_006273.1 + 124714 0.72 0.863094
Target:  5'- uCCucGUACGAACggucgaGCGAGAAGAGGCc -3'
miRNA:   3'- cGGccCGUGCUUGa-----CGCUCUUCUUCG- -5'
30157 3' -53.6 NC_006273.1 + 101301 0.72 0.847803
Target:  5'- cGCCGGuGCcccCGAguGCgugGCGGGAGGAGGg -3'
miRNA:   3'- -CGGCC-CGu--GCU--UGa--CGCUCUUCUUCg -5'
30157 3' -53.6 NC_006273.1 + 214654 0.81 0.405708
Target:  5'- -aUGGGCACGAGCacgGUGAGaAAGAAGCu -3'
miRNA:   3'- cgGCCCGUGCUUGa--CGCUC-UUCUUCG- -5'
30157 3' -53.6 NC_006273.1 + 100334 0.8 0.449356
Target:  5'- gGCgCGGuGCAUGggUUGCGAGAAGGucucgGGCg -3'
miRNA:   3'- -CG-GCC-CGUGCuuGACGCUCUUCU-----UCG- -5'
30157 3' -53.6 NC_006273.1 + 1021 0.74 0.732638
Target:  5'- cGCCGGGgACGggggGugUGCGGGGacgGGggGUg -3'
miRNA:   3'- -CGGCCCgUGC----UugACGCUCU---UCuuCG- -5'
30157 3' -53.6 NC_006273.1 + 79955 0.74 0.732638
Target:  5'- cGCCGGGCACGGcgGCgGUaGAGAuGAuAGCg -3'
miRNA:   3'- -CGGCCCGUGCU--UGaCG-CUCUuCU-UCG- -5'
30157 3' -53.6 NC_006273.1 + 103476 0.73 0.779647
Target:  5'- aGCUGGcGCGCcAGCUGCGuggaggugccGAAGAAGCc -3'
miRNA:   3'- -CGGCC-CGUGcUUGACGCu---------CUUCUUCG- -5'
30157 3' -53.6 NC_006273.1 + 193770 0.73 0.815007
Target:  5'- aGCCagGGGCugGGugUGCGAaaccGGuguGGAAGCc -3'
miRNA:   3'- -CGG--CCCGugCUugACGCU----CU---UCUUCG- -5'
30157 3' -53.6 NC_006273.1 + 64253 0.73 0.815007
Target:  5'- -gCGGGCACGGGCguugcgGCGgcGGccGAAGCg -3'
miRNA:   3'- cgGCCCGUGCUUGa-----CGC--UCuuCUUCG- -5'
30157 3' -53.6 NC_006273.1 + 40743 0.72 0.839871
Target:  5'- cGCCGaGGCugACG-GCUGuCGAgccGAAGAAGCg -3'
miRNA:   3'- -CGGC-CCG--UGCuUGAC-GCU---CUUCUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.