miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30157 5' -59.4 NC_006273.1 + 221784 0.66 0.880545
Target:  5'- cGUGGggcgGcCCUCCagcacggcggcccggGCCGCCcGGCGGGu -3'
miRNA:   3'- -CGCCaa--CaGGAGG---------------UGGCGG-UCGCCUg -5'
30157 5' -59.4 NC_006273.1 + 163578 0.66 0.877851
Target:  5'- cGUGGUaaaccccguUGUCg-CCACCGCC-GCGG-Cu -3'
miRNA:   3'- -CGCCA---------ACAGgaGGUGGCGGuCGCCuG- -5'
30157 5' -59.4 NC_006273.1 + 42154 0.66 0.873752
Target:  5'- aCGGcagcauuaacgCCgCCGCCGCCAGCGGuaGCu -3'
miRNA:   3'- cGCCaaca-------GGaGGUGGCGGUCGCC--UG- -5'
30157 5' -59.4 NC_006273.1 + 45326 0.66 0.87098
Target:  5'- aCGGUguucGUCCccCCGCCGUCGGaGGAg -3'
miRNA:   3'- cGCCAa---CAGGa-GGUGGCGGUCgCCUg -5'
30157 5' -59.4 NC_006273.1 + 115121 0.66 0.87098
Target:  5'- aGCGaGg---CCgaaGCCGCCAGCGGAa -3'
miRNA:   3'- -CGC-CaacaGGaggUGGCGGUCGCCUg -5'
30157 5' -59.4 NC_006273.1 + 120495 0.66 0.87098
Target:  5'- cCGGUg--CCggCCG-CGCUAGCGGGCu -3'
miRNA:   3'- cGCCAacaGGa-GGUgGCGGUCGCCUG- -5'
30157 5' -59.4 NC_006273.1 + 151969 0.66 0.87098
Target:  5'- cGCGGaUGUCCcgCUcgggcGCCGCCGGgcCGGGu -3'
miRNA:   3'- -CGCCaACAGGa-GG-----UGGCGGUC--GCCUg -5'
30157 5' -59.4 NC_006273.1 + 44440 0.66 0.87098
Target:  5'- uGCGGcagUGU-UUCCGCgGCCAGUugcuGGACc -3'
miRNA:   3'- -CGCCa--ACAgGAGGUGgCGGUCG----CCUG- -5'
30157 5' -59.4 NC_006273.1 + 36453 0.66 0.87098
Target:  5'- cGCGGUgaaagaaggucuUGUCCUCgGCgcccucaauuuCGCCcAGCGG-Ca -3'
miRNA:   3'- -CGCCA------------ACAGGAGgUG-----------GCGG-UCGCCuG- -5'
30157 5' -59.4 NC_006273.1 + 152580 0.66 0.87098
Target:  5'- -aGGUUagCCugcagcaggUCCugCGCCAGCGGGu -3'
miRNA:   3'- cgCCAAcaGG---------AGGugGCGGUCGCCUg -5'
30157 5' -59.4 NC_006273.1 + 31467 0.66 0.863916
Target:  5'- gGCGGUggcUGcgCCUCC-UCGUCGGCcuGGGCu -3'
miRNA:   3'- -CGCCA---ACa-GGAGGuGGCGGUCG--CCUG- -5'
30157 5' -59.4 NC_006273.1 + 31178 0.66 0.863916
Target:  5'- cCGGagcGUgCUCCAUUGCCGGCcGGCg -3'
miRNA:   3'- cGCCaa-CAgGAGGUGGCGGUCGcCUG- -5'
30157 5' -59.4 NC_006273.1 + 64753 0.66 0.863916
Target:  5'- cGCGaGUUG-CaaaagaagCUGcCCGCCGGCGGGCg -3'
miRNA:   3'- -CGC-CAACaGga------GGU-GGCGGUCGCCUG- -5'
30157 5' -59.4 NC_006273.1 + 141239 0.66 0.863916
Target:  5'- aGCGGUaaUUUUCCACCGCC-GC-GACc -3'
miRNA:   3'- -CGCCAacAGGAGGUGGCGGuCGcCUG- -5'
30157 5' -59.4 NC_006273.1 + 73748 0.66 0.863916
Target:  5'- gGCGGcgG-CCgaggCCcggcagcggcGCCGCCAGCGG-Cg -3'
miRNA:   3'- -CGCCaaCaGGa---GG----------UGGCGGUCGCCuG- -5'
30157 5' -59.4 NC_006273.1 + 171553 0.66 0.863916
Target:  5'- cGUGGgagagGUCaCUcgcggcgugCCGCUGCCGGUGGAa -3'
miRNA:   3'- -CGCCaa---CAG-GA---------GGUGGCGGUCGCCUg -5'
30157 5' -59.4 NC_006273.1 + 190049 0.66 0.863916
Target:  5'- gGUGGgacUCCUCCgACgGCgGGgGGACg -3'
miRNA:   3'- -CGCCaacAGGAGG-UGgCGgUCgCCUG- -5'
30157 5' -59.4 NC_006273.1 + 95760 0.66 0.856665
Target:  5'- -aGGUggaUCCUCCGUCGUCcucGCGGACg -3'
miRNA:   3'- cgCCAac-AGGAGGUGGCGGu--CGCCUG- -5'
30157 5' -59.4 NC_006273.1 + 125964 0.66 0.856665
Target:  5'- cGCGGccuuUUGUCCgUgCACCGUggCGGCGG-Ca -3'
miRNA:   3'- -CGCC----AACAGG-AgGUGGCG--GUCGCCuG- -5'
30157 5' -59.4 NC_006273.1 + 233669 0.66 0.849231
Target:  5'- uCGGcccaGUCg-CCACCGCCgcGGCGGAUu -3'
miRNA:   3'- cGCCaa--CAGgaGGUGGCGG--UCGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.