miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30157 5' -59.4 NC_006273.1 + 151699 1.11 0.001697
Target:  5'- gGCGGUUGUCCUCCACCGCCAGCGGACg -3'
miRNA:   3'- -CGCCAACAGGAGGUGGCGGUCGCCUG- -5'
30157 5' -59.4 NC_006273.1 + 72248 0.78 0.276183
Target:  5'- uGCGGUgGUgCCUCCGCCGCCucAGcCGGAg -3'
miRNA:   3'- -CGCCAaCA-GGAGGUGGCGG--UC-GCCUg -5'
30157 5' -59.4 NC_006273.1 + 92961 0.76 0.329104
Target:  5'- cGUGGagucggCCUCCACCGCCguGGCGGAUu -3'
miRNA:   3'- -CGCCaaca--GGAGGUGGCGG--UCGCCUG- -5'
30157 5' -59.4 NC_006273.1 + 165924 0.74 0.425096
Target:  5'- uGUGGUgacgacguucuugaGUCCUCCGCCGCuaCAGCGG-Cg -3'
miRNA:   3'- -CGCCAa-------------CAGGAGGUGGCG--GUCGCCuG- -5'
30157 5' -59.4 NC_006273.1 + 90296 0.73 0.491561
Target:  5'- gGUGGUgaUCagcgCCGCCGCCAGCGG-Cg -3'
miRNA:   3'- -CGCCAacAGga--GGUGGCGGUCGCCuG- -5'
30157 5' -59.4 NC_006273.1 + 177022 0.72 0.519104
Target:  5'- uCGGUUGccgcggCuCUCCAUCGCCAGCGcGCg -3'
miRNA:   3'- cGCCAACa-----G-GAGGUGGCGGUCGCcUG- -5'
30157 5' -59.4 NC_006273.1 + 144405 0.72 0.519104
Target:  5'- aGCGGcUGUCUgCCcggcGCCGCggCGGCGGACg -3'
miRNA:   3'- -CGCCaACAGGaGG----UGGCG--GUCGCCUG- -5'
30157 5' -59.4 NC_006273.1 + 63797 0.72 0.547235
Target:  5'- cGCGGUgcuaccgcGUCUuccccuUCCACCGgCAGCGGcACg -3'
miRNA:   3'- -CGCCAa-------CAGG------AGGUGGCgGUCGCC-UG- -5'
30157 5' -59.4 NC_006273.1 + 137359 0.71 0.584481
Target:  5'- gGCGcGUUGUCCUCgCACCGggcuuuggaucguCCGugaucgccGCGGACg -3'
miRNA:   3'- -CGC-CAACAGGAG-GUGGC-------------GGU--------CGCCUG- -5'
30157 5' -59.4 NC_006273.1 + 233054 0.71 0.604751
Target:  5'- uGCGacag--CUCCGCCGCCAGCGGGu -3'
miRNA:   3'- -CGCcaacagGAGGUGGCGGUCGCCUg -5'
30157 5' -59.4 NC_006273.1 + 38161 0.71 0.604751
Target:  5'- uGCGacag--CUCCGCCGCCAGCGGGu -3'
miRNA:   3'- -CGCcaacagGAGGUGGCGGUCGCCUg -5'
30157 5' -59.4 NC_006273.1 + 167369 0.7 0.67256
Target:  5'- cCGGcaGUCCUCCGCCacccaugacGCCGcCGGGCa -3'
miRNA:   3'- cGCCaaCAGGAGGUGG---------CGGUcGCCUG- -5'
30157 5' -59.4 NC_006273.1 + 183879 0.7 0.67256
Target:  5'- aGCGaGUUGUCCUCgucgccgccguUGCCGCCGGUcguggugaaGGAUg -3'
miRNA:   3'- -CGC-CAACAGGAG-----------GUGGCGGUCG---------CCUG- -5'
30157 5' -59.4 NC_006273.1 + 30209 0.7 0.682185
Target:  5'- ---cUUGUCCUcaCCGCgGCCAGCGuGGCg -3'
miRNA:   3'- cgccAACAGGA--GGUGgCGGUCGC-CUG- -5'
30157 5' -59.4 NC_006273.1 + 163832 0.7 0.682185
Target:  5'- cCGGUUGUCgCaagUCGCCGgCAGCGGcCg -3'
miRNA:   3'- cGCCAACAG-Ga--GGUGGCgGUCGCCuG- -5'
30157 5' -59.4 NC_006273.1 + 124758 0.69 0.701318
Target:  5'- cGCuGGUUGaUUUCCAgCGCCAGUGG-Ca -3'
miRNA:   3'- -CG-CCAACaGGAGGUgGCGGUCGCCuG- -5'
30157 5' -59.4 NC_006273.1 + 185757 0.69 0.701318
Target:  5'- -gGGUUGUCaaa-ACCGCCAuCGGACg -3'
miRNA:   3'- cgCCAACAGgaggUGGCGGUcGCCUG- -5'
30157 5' -59.4 NC_006273.1 + 190670 0.69 0.714589
Target:  5'- gGCGGUUcggcGUCCUCCACCaGCggcgucgucUcaucuuugccacagcAGCGGACg -3'
miRNA:   3'- -CGCCAA----CAGGAGGUGG-CG---------G---------------UCGCCUG- -5'
30157 5' -59.4 NC_006273.1 + 229130 0.69 0.720241
Target:  5'- cGCuGGUUGU--UUCGCCGCCGGCGaGCu -3'
miRNA:   3'- -CG-CCAACAggAGGUGGCGGUCGCcUG- -5'
30157 5' -59.4 NC_006273.1 + 50957 0.69 0.738892
Target:  5'- cCGGUgacgCCagCACCGCCGGCcGACa -3'
miRNA:   3'- cGCCAaca-GGagGUGGCGGUCGcCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.