miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30157 5' -59.4 NC_006273.1 + 24454 0.66 0.849231
Target:  5'- -aGGUUGUCgUCCgaAUCGCCGGCuuGCu -3'
miRNA:   3'- cgCCAACAGgAGG--UGGCGGUCGccUG- -5'
30157 5' -59.4 NC_006273.1 + 38257 0.67 0.836971
Target:  5'- cGCGGcacgGUCCccgaCGCCGCCGGacccgccaucgccguCGGACc -3'
miRNA:   3'- -CGCCaa--CAGGag--GUGGCGGUC---------------GCCUG- -5'
30157 5' -59.4 NC_006273.1 + 233150 0.67 0.836971
Target:  5'- cGCGGcacgGUCCccgaCGCCGCCGGacccgccaucgccguCGGACc -3'
miRNA:   3'- -CGCCaa--CAGGag--GUGGCGGUC---------------GCCUG- -5'
30157 5' -59.4 NC_006273.1 + 46327 0.67 0.833838
Target:  5'- aGCGGccG-CCUaCGCCGCCGGUccGGGCc -3'
miRNA:   3'- -CGCCaaCaGGAgGUGGCGGUCG--CCUG- -5'
30157 5' -59.4 NC_006273.1 + 158015 0.67 0.833838
Target:  5'- uGCGGUUGUCCUCgCACgaagUGCaGGCGa-- -3'
miRNA:   3'- -CGCCAACAGGAG-GUG----GCGgUCGCcug -5'
30157 5' -59.4 NC_006273.1 + 70820 0.67 0.833838
Target:  5'- aGCGGccugGcCUUCgGCaCGCUGGCGGGCc -3'
miRNA:   3'- -CGCCaa--CaGGAGgUG-GCGGUCGCCUG- -5'
30157 5' -59.4 NC_006273.1 + 170589 0.67 0.833051
Target:  5'- cGCGGcacuucgucgcccaGUCUguagaccggcagCCGcCCGCCGGCGGGCa -3'
miRNA:   3'- -CGCCaa------------CAGGa-----------GGU-GGCGGUCGCCUG- -5'
30157 5' -59.4 NC_006273.1 + 139161 0.67 0.817786
Target:  5'- -gGGUgcgGUCCUCCAUCGCUugucaacaacCGGAUg -3'
miRNA:   3'- cgCCAa--CAGGAGGUGGCGGuc--------GCCUG- -5'
30157 5' -59.4 NC_006273.1 + 85160 0.67 0.817786
Target:  5'- aGCGuGUUGcgCgUCaACCGCCAGCGaGCg -3'
miRNA:   3'- -CGC-CAACa-GgAGgUGGCGGUCGCcUG- -5'
30157 5' -59.4 NC_006273.1 + 230461 0.67 0.809529
Target:  5'- cCGGc-GUUCUCCagaaGCC-CCGGCGGGCg -3'
miRNA:   3'- cGCCaaCAGGAGG----UGGcGGUCGCCUG- -5'
30157 5' -59.4 NC_006273.1 + 118194 0.67 0.809529
Target:  5'- uGCGGcUGUCgC-CCgaaCGCuCGGCGGACg -3'
miRNA:   3'- -CGCCaACAG-GaGGug-GCG-GUCGCCUG- -5'
30157 5' -59.4 NC_006273.1 + 119711 0.67 0.809529
Target:  5'- -aGGgcGUCUaCCAgCGUCAGCGGGa -3'
miRNA:   3'- cgCCaaCAGGaGGUgGCGGUCGCCUg -5'
30157 5' -59.4 NC_006273.1 + 216374 0.67 0.801128
Target:  5'- cUGGUUGUCUUgCAgCgCGCCcGUGGGCa -3'
miRNA:   3'- cGCCAACAGGAgGU-G-GCGGuCGCCUG- -5'
30157 5' -59.4 NC_006273.1 + 190333 0.67 0.801128
Target:  5'- gGCGGUaauaguauagGUCCgugcgagcaggCCGCCGCCGuGgGGGCc -3'
miRNA:   3'- -CGCCAa---------CAGGa----------GGUGGCGGU-CgCCUG- -5'
30157 5' -59.4 NC_006273.1 + 149638 0.67 0.80028
Target:  5'- gGCGGUaGUgaucggguuucucCCUCCacGCCGCCcGCGG-Cg -3'
miRNA:   3'- -CGCCAaCA-------------GGAGG--UGGCGGuCGCCuG- -5'
30157 5' -59.4 NC_006273.1 + 140752 0.67 0.80028
Target:  5'- cGCGGaccccggGUCCcguccguUCCGCgGCgGGUGGACc -3'
miRNA:   3'- -CGCCaa-----CAGG-------AGGUGgCGgUCGCCUG- -5'
30157 5' -59.4 NC_006273.1 + 21493 0.68 0.796021
Target:  5'- aGCGGUcaggUGUUacacaacgacgccagCUguuaCAUCGCCGGCGGGCg -3'
miRNA:   3'- -CGCCA----ACAG---------------GAg---GUGGCGGUCGCCUG- -5'
30157 5' -59.4 NC_006273.1 + 50130 0.68 0.792589
Target:  5'- uGCGGUcGacagacUCCUCCGuCCGCCuuCGGAg -3'
miRNA:   3'- -CGCCAaC------AGGAGGU-GGCGGucGCCUg -5'
30157 5' -59.4 NC_006273.1 + 162406 0.68 0.792589
Target:  5'- aGCGGcgGUCagcaCUCCucggacuCCGCCAaCGGACu -3'
miRNA:   3'- -CGCCaaCAG----GAGGu------GGCGGUcGCCUG- -5'
30157 5' -59.4 NC_006273.1 + 135388 0.68 0.792589
Target:  5'- -------aCCacgCCACUGCCGGCGGACa -3'
miRNA:   3'- cgccaacaGGa--GGUGGCGGUCGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.