miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30157 5' -59.4 NC_006273.1 + 21493 0.68 0.796021
Target:  5'- aGCGGUcaggUGUUacacaacgacgccagCUguuaCAUCGCCGGCGGGCg -3'
miRNA:   3'- -CGCCA----ACAG---------------GAg---GUGGCGGUCGCCUG- -5'
30157 5' -59.4 NC_006273.1 + 24454 0.66 0.849231
Target:  5'- -aGGUUGUCgUCCgaAUCGCCGGCuuGCu -3'
miRNA:   3'- cgCCAACAGgAGG--UGGCGGUCGccUG- -5'
30157 5' -59.4 NC_006273.1 + 30209 0.7 0.682185
Target:  5'- ---cUUGUCCUcaCCGCgGCCAGCGuGGCg -3'
miRNA:   3'- cgccAACAGGA--GGUGgCGGUCGC-CUG- -5'
30157 5' -59.4 NC_006273.1 + 31178 0.66 0.863916
Target:  5'- cCGGagcGUgCUCCAUUGCCGGCcGGCg -3'
miRNA:   3'- cGCCaa-CAgGAGGUGGCGGUCGcCUG- -5'
30157 5' -59.4 NC_006273.1 + 31467 0.66 0.863916
Target:  5'- gGCGGUggcUGcgCCUCC-UCGUCGGCcuGGGCu -3'
miRNA:   3'- -CGCCA---ACa-GGAGGuGGCGGUCG--CCUG- -5'
30157 5' -59.4 NC_006273.1 + 36453 0.66 0.87098
Target:  5'- cGCGGUgaaagaaggucuUGUCCUCgGCgcccucaauuuCGCCcAGCGG-Ca -3'
miRNA:   3'- -CGCCA------------ACAGGAGgUG-----------GCGG-UCGCCuG- -5'
30157 5' -59.4 NC_006273.1 + 38161 0.71 0.604751
Target:  5'- uGCGacag--CUCCGCCGCCAGCGGGu -3'
miRNA:   3'- -CGCcaacagGAGGUGGCGGUCGCCUg -5'
30157 5' -59.4 NC_006273.1 + 38257 0.67 0.836971
Target:  5'- cGCGGcacgGUCCccgaCGCCGCCGGacccgccaucgccguCGGACc -3'
miRNA:   3'- -CGCCaa--CAGGag--GUGGCGGUC---------------GCCUG- -5'
30157 5' -59.4 NC_006273.1 + 42154 0.66 0.873752
Target:  5'- aCGGcagcauuaacgCCgCCGCCGCCAGCGGuaGCu -3'
miRNA:   3'- cGCCaaca-------GGaGGUGGCGGUCGCC--UG- -5'
30157 5' -59.4 NC_006273.1 + 44440 0.66 0.87098
Target:  5'- uGCGGcagUGU-UUCCGCgGCCAGUugcuGGACc -3'
miRNA:   3'- -CGCCa--ACAgGAGGUGgCGGUCG----CCUG- -5'
30157 5' -59.4 NC_006273.1 + 45326 0.66 0.87098
Target:  5'- aCGGUguucGUCCccCCGCCGUCGGaGGAg -3'
miRNA:   3'- cGCCAa---CAGGa-GGUGGCGGUCgCCUg -5'
30157 5' -59.4 NC_006273.1 + 46327 0.67 0.833838
Target:  5'- aGCGGccG-CCUaCGCCGCCGGUccGGGCc -3'
miRNA:   3'- -CGCCaaCaGGAgGUGGCGGUCG--CCUG- -5'
30157 5' -59.4 NC_006273.1 + 50130 0.68 0.792589
Target:  5'- uGCGGUcGacagacUCCUCCGuCCGCCuuCGGAg -3'
miRNA:   3'- -CGCCAaC------AGGAGGU-GGCGGucGCCUg -5'
30157 5' -59.4 NC_006273.1 + 50957 0.69 0.738892
Target:  5'- cCGGUgacgCCagCACCGCCGGCcGACa -3'
miRNA:   3'- cGCCAaca-GGagGUGGCGGUCGcCUG- -5'
30157 5' -59.4 NC_006273.1 + 61250 0.68 0.775129
Target:  5'- uGCGGgcccagGUCCagCCACUGC-AGCGcGGCg -3'
miRNA:   3'- -CGCCaa----CAGGa-GGUGGCGgUCGC-CUG- -5'
30157 5' -59.4 NC_006273.1 + 63797 0.72 0.547235
Target:  5'- cGCGGUgcuaccgcGUCUuccccuUCCACCGgCAGCGGcACg -3'
miRNA:   3'- -CGCCAa-------CAGG------AGGUGGCgGUCGCC-UG- -5'
30157 5' -59.4 NC_006273.1 + 64753 0.66 0.863916
Target:  5'- cGCGaGUUG-CaaaagaagCUGcCCGCCGGCGGGCg -3'
miRNA:   3'- -CGC-CAACaGga------GGU-GGCGGUCGCCUG- -5'
30157 5' -59.4 NC_006273.1 + 70820 0.67 0.833838
Target:  5'- aGCGGccugGcCUUCgGCaCGCUGGCGGGCc -3'
miRNA:   3'- -CGCCaa--CaGGAGgUG-GCGGUCGCCUG- -5'
30157 5' -59.4 NC_006273.1 + 72248 0.78 0.276183
Target:  5'- uGCGGUgGUgCCUCCGCCGCCucAGcCGGAg -3'
miRNA:   3'- -CGCCAaCA-GGAGGUGGCGG--UC-GCCUg -5'
30157 5' -59.4 NC_006273.1 + 73748 0.66 0.863916
Target:  5'- gGCGGcgG-CCgaggCCcggcagcggcGCCGCCAGCGG-Cg -3'
miRNA:   3'- -CGCCaaCaGGa---GG----------UGGCGGUCGCCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.