miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30157 5' -59.4 NC_006273.1 + 119711 0.67 0.809529
Target:  5'- -aGGgcGUCUaCCAgCGUCAGCGGGa -3'
miRNA:   3'- cgCCaaCAGGaGGUgGCGGUCGCCUg -5'
30157 5' -59.4 NC_006273.1 + 206060 0.68 0.766222
Target:  5'- uCGGagaUGUCCUCCACCGgCGuCGGcACu -3'
miRNA:   3'- cGCCa--ACAGGAGGUGGCgGUcGCC-UG- -5'
30157 5' -59.4 NC_006273.1 + 142042 0.68 0.766222
Target:  5'- cGUGGUgccGUCCacgUCgucucgcggcagCGCCGCCAGCGG-Cg -3'
miRNA:   3'- -CGCCAa--CAGG---AG------------GUGGCGGUCGCCuG- -5'
30157 5' -59.4 NC_006273.1 + 61250 0.68 0.775129
Target:  5'- uGCGGgcccagGUCCagCCACUGC-AGCGcGGCg -3'
miRNA:   3'- -CGCCaa----CAGGa-GGUGGCGgUCGC-CUG- -5'
30157 5' -59.4 NC_006273.1 + 50130 0.68 0.792589
Target:  5'- uGCGGUcGacagacUCCUCCGuCCGCCuuCGGAg -3'
miRNA:   3'- -CGCCAaC------AGGAGGU-GGCGGucGCCUg -5'
30157 5' -59.4 NC_006273.1 + 162406 0.68 0.792589
Target:  5'- aGCGGcgGUCagcaCUCCucggacuCCGCCAaCGGACu -3'
miRNA:   3'- -CGCCaaCAG----GAGGu------GGCGGUcGCCUG- -5'
30157 5' -59.4 NC_006273.1 + 21493 0.68 0.796021
Target:  5'- aGCGGUcaggUGUUacacaacgacgccagCUguuaCAUCGCCGGCGGGCg -3'
miRNA:   3'- -CGCCA----ACAG---------------GAg---GUGGCGGUCGCCUG- -5'
30157 5' -59.4 NC_006273.1 + 149638 0.67 0.80028
Target:  5'- gGCGGUaGUgaucggguuucucCCUCCacGCCGCCcGCGG-Cg -3'
miRNA:   3'- -CGCCAaCA-------------GGAGG--UGGCGGuCGCCuG- -5'
30157 5' -59.4 NC_006273.1 + 216374 0.67 0.801128
Target:  5'- cUGGUUGUCUUgCAgCgCGCCcGUGGGCa -3'
miRNA:   3'- cGCCAACAGGAgGU-G-GCGGuCGCCUG- -5'
30157 5' -59.4 NC_006273.1 + 147854 0.68 0.748096
Target:  5'- cGCGGUga-CCgUCUGCCGCCGGCuGAg -3'
miRNA:   3'- -CGCCAacaGG-AGGUGGCGGUCGcCUg -5'
30157 5' -59.4 NC_006273.1 + 229130 0.69 0.720241
Target:  5'- cGCuGGUUGU--UUCGCCGCCGGCGaGCu -3'
miRNA:   3'- -CG-CCAACAggAGGUGGCGGUCGCcUG- -5'
30157 5' -59.4 NC_006273.1 + 190670 0.69 0.714589
Target:  5'- gGCGGUUcggcGUCCUCCACCaGCggcgucgucUcaucuuugccacagcAGCGGACg -3'
miRNA:   3'- -CGCCAA----CAGGAGGUGG-CG---------G---------------UCGCCUG- -5'
30157 5' -59.4 NC_006273.1 + 144405 0.72 0.519104
Target:  5'- aGCGGcUGUCUgCCcggcGCCGCggCGGCGGACg -3'
miRNA:   3'- -CGCCaACAGGaGG----UGGCG--GUCGCCUG- -5'
30157 5' -59.4 NC_006273.1 + 137359 0.71 0.584481
Target:  5'- gGCGcGUUGUCCUCgCACCGggcuuuggaucguCCGugaucgccGCGGACg -3'
miRNA:   3'- -CGC-CAACAGGAG-GUGGC-------------GGU--------CGCCUG- -5'
30157 5' -59.4 NC_006273.1 + 233054 0.71 0.604751
Target:  5'- uGCGacag--CUCCGCCGCCAGCGGGu -3'
miRNA:   3'- -CGCcaacagGAGGUGGCGGUCGCCUg -5'
30157 5' -59.4 NC_006273.1 + 167369 0.7 0.67256
Target:  5'- cCGGcaGUCCUCCGCCacccaugacGCCGcCGGGCa -3'
miRNA:   3'- cGCCaaCAGGAGGUGG---------CGGUcGCCUG- -5'
30157 5' -59.4 NC_006273.1 + 30209 0.7 0.682185
Target:  5'- ---cUUGUCCUcaCCGCgGCCAGCGuGGCg -3'
miRNA:   3'- cgccAACAGGA--GGUGgCGGUCGC-CUG- -5'
30157 5' -59.4 NC_006273.1 + 163832 0.7 0.682185
Target:  5'- cCGGUUGUCgCaagUCGCCGgCAGCGGcCg -3'
miRNA:   3'- cGCCAACAG-Ga--GGUGGCgGUCGCCuG- -5'
30157 5' -59.4 NC_006273.1 + 185757 0.69 0.701318
Target:  5'- -gGGUUGUCaaa-ACCGCCAuCGGACg -3'
miRNA:   3'- cgCCAACAGgaggUGGCGGUcGCCUG- -5'
30157 5' -59.4 NC_006273.1 + 124758 0.69 0.701318
Target:  5'- cGCuGGUUGaUUUCCAgCGCCAGUGG-Ca -3'
miRNA:   3'- -CG-CCAACaGGAGGUgGCGGUCGCCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.