miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30158 3' -54.7 NC_006273.1 + 153555 0.66 0.979932
Target:  5'- cUCGCUCGGCgcaGGUCaagaccaucuacCGCGUCUu- -3'
miRNA:   3'- -AGCGAGCCGaa-CCAGaa----------GUGCAGGuc -5'
30158 3' -54.7 NC_006273.1 + 36607 0.66 0.973788
Target:  5'- -gGCUCGGUgaccucucGGUCggCGUGUCCAGc -3'
miRNA:   3'- agCGAGCCGaa------CCAGaaGUGCAGGUC- -5'
30158 3' -54.7 NC_006273.1 + 204776 0.66 0.973788
Target:  5'- uUCGCUCGGUU---UCUUgGCGgcgCCGGu -3'
miRNA:   3'- -AGCGAGCCGAaccAGAAgUGCa--GGUC- -5'
30158 3' -54.7 NC_006273.1 + 83031 0.66 0.973788
Target:  5'- aCGCU-GGUUUGGUUgauggUCACGcagcuggCCAGg -3'
miRNA:   3'- aGCGAgCCGAACCAGa----AGUGCa------GGUC- -5'
30158 3' -54.7 NC_006273.1 + 166572 0.66 0.971096
Target:  5'- aCGCgCGGCgccgccGG-CUaCGCGUCCGGg -3'
miRNA:   3'- aGCGaGCCGaa----CCaGAaGUGCAGGUC- -5'
30158 3' -54.7 NC_006273.1 + 7789 0.67 0.965125
Target:  5'- gCGCcCGGCUuuuaUGGaacacUCGCGUCCGGu -3'
miRNA:   3'- aGCGaGCCGA----ACCaga--AGUGCAGGUC- -5'
30158 3' -54.7 NC_006273.1 + 188057 0.68 0.946546
Target:  5'- gCGCcggCGGCgcgGGUCUcgUCuCGUCCAc -3'
miRNA:   3'- aGCGa--GCCGaa-CCAGA--AGuGCAGGUc -5'
30158 3' -54.7 NC_006273.1 + 139196 0.68 0.942172
Target:  5'- aUCGCgguaGaGCUcGGUCaaCGCGUCCAGc -3'
miRNA:   3'- -AGCGag--C-CGAaCCAGaaGUGCAGGUC- -5'
30158 3' -54.7 NC_006273.1 + 211161 0.68 0.929738
Target:  5'- uUUGCUCGGUUUGGUuaaaaauaaggucacCUUUGgcucuuucccCGUCCAGg -3'
miRNA:   3'- -AGCGAGCCGAACCA---------------GAAGU----------GCAGGUC- -5'
30158 3' -54.7 NC_006273.1 + 129387 0.7 0.892573
Target:  5'- cUCGC-CGGCgcUGGUCUUgACGUgcgUCAGa -3'
miRNA:   3'- -AGCGaGCCGa-ACCAGAAgUGCA---GGUC- -5'
30158 3' -54.7 NC_006273.1 + 147595 0.7 0.872035
Target:  5'- cCGCcgCGGCUcacgacgcGGUUUgagCACGUCCGGg -3'
miRNA:   3'- aGCGa-GCCGAa-------CCAGAa--GUGCAGGUC- -5'
30158 3' -54.7 NC_006273.1 + 105634 0.7 0.857306
Target:  5'- aCGCUCGGgUUcGGUCcUCACGUguaUCGGa -3'
miRNA:   3'- aGCGAGCCgAA-CCAGaAGUGCA---GGUC- -5'
30158 3' -54.7 NC_006273.1 + 166948 0.72 0.782157
Target:  5'- gCGcCUUGGCgucgggGGUggUCACGUCCAGu -3'
miRNA:   3'- aGC-GAGCCGaa----CCAgaAGUGCAGGUC- -5'
30158 3' -54.7 NC_006273.1 + 152669 1.05 0.011596
Target:  5'- cUCGCUCGGCUUGGUCUUCACGUCCAc -3'
miRNA:   3'- -AGCGAGCCGAACCAGAAGUGCAGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.