miRNA display CGI


Results 1 - 20 of 99 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30158 5' -53.6 NC_006273.1 + 125154 0.66 0.991369
Target:  5'- cGUCCCACgGgcccuagAC-CGCCAggCCGCa -3'
miRNA:   3'- -CAGGGUGgCaa-----UGcGUGGUuaGGUGc -5'
30158 5' -53.6 NC_006273.1 + 148108 0.66 0.991369
Target:  5'- -gCCCGCgaGUUAuuugUGCACCGAcUCCAUGu -3'
miRNA:   3'- caGGGUGg-CAAU----GCGUGGUU-AGGUGC- -5'
30158 5' -53.6 NC_006273.1 + 140569 0.66 0.991369
Target:  5'- -aCCUACCGUcguCGUcgGCCGAccgCCGCGa -3'
miRNA:   3'- caGGGUGGCAau-GCG--UGGUUa--GGUGC- -5'
30158 5' -53.6 NC_006273.1 + 141737 0.66 0.991369
Target:  5'- cGUCCCAgCaggGCGCGCCGGcgCCAg- -3'
miRNA:   3'- -CAGGGUgGcaaUGCGUGGUUa-GGUgc -5'
30158 5' -53.6 NC_006273.1 + 161209 0.66 0.991369
Target:  5'- cGUCUCGCCG--GCGCGCCAcguaggugaGUUCAa- -3'
miRNA:   3'- -CAGGGUGGCaaUGCGUGGU---------UAGGUgc -5'
30158 5' -53.6 NC_006273.1 + 41358 0.66 0.991369
Target:  5'- -gCCCACgcgCGUUcGCGCGgCCAGUUgGCGg -3'
miRNA:   3'- caGGGUG---GCAA-UGCGU-GGUUAGgUGC- -5'
30158 5' -53.6 NC_006273.1 + 23249 0.66 0.991369
Target:  5'- -cCCCuCCGUaa-GCGCCGacgaggaacuGUCCGCGa -3'
miRNA:   3'- caGGGuGGCAaugCGUGGU----------UAGGUGC- -5'
30158 5' -53.6 NC_006273.1 + 67958 0.66 0.990187
Target:  5'- --aCCGCCGagaGCGCGCCcg-CCACu -3'
miRNA:   3'- cagGGUGGCaa-UGCGUGGuuaGGUGc -5'
30158 5' -53.6 NC_006273.1 + 153610 0.66 0.990187
Target:  5'- cGUgCCGCUGgcugACaGCGCCGuuagCCACGa -3'
miRNA:   3'- -CAgGGUGGCaa--UG-CGUGGUua--GGUGC- -5'
30158 5' -53.6 NC_006273.1 + 127826 0.66 0.990187
Target:  5'- --gCCACCGUUuCGCugUuuUCCugGc -3'
miRNA:   3'- cagGGUGGCAAuGCGugGuuAGGugC- -5'
30158 5' -53.6 NC_006273.1 + 105448 0.66 0.990187
Target:  5'- gGUCUCACCGUcgGCGCuACaaggAGUCgGCGc -3'
miRNA:   3'- -CAGGGUGGCAa-UGCG-UGg---UUAGgUGC- -5'
30158 5' -53.6 NC_006273.1 + 91178 0.66 0.990187
Target:  5'- --gCCGCCGUgccggucguCGCACCGcucggCCACGc -3'
miRNA:   3'- cagGGUGGCAau-------GCGUGGUua---GGUGC- -5'
30158 5' -53.6 NC_006273.1 + 119087 0.66 0.988882
Target:  5'- -cCCCGCCGUccCGCG--GGUCCGCa -3'
miRNA:   3'- caGGGUGGCAauGCGUggUUAGGUGc -5'
30158 5' -53.6 NC_006273.1 + 201183 0.66 0.988882
Target:  5'- cGUCaagUACCGg-ACGCACCGcgCCGCc -3'
miRNA:   3'- -CAGg--GUGGCaaUGCGUGGUuaGGUGc -5'
30158 5' -53.6 NC_006273.1 + 186129 0.66 0.988882
Target:  5'- --aCCACCaGUUguuggGCGCGCUGggCCACGa -3'
miRNA:   3'- cagGGUGG-CAA-----UGCGUGGUuaGGUGC- -5'
30158 5' -53.6 NC_006273.1 + 138902 0.66 0.987445
Target:  5'- aGUCUUGCCGUgacgucGCgGCACCAGgaaCACGg -3'
miRNA:   3'- -CAGGGUGGCAa-----UG-CGUGGUUag-GUGC- -5'
30158 5' -53.6 NC_006273.1 + 162719 0.66 0.987141
Target:  5'- -gCUCGCCGUgccuagcacuacUACGCGCCAAgcgcuucgacgcCCGCGc -3'
miRNA:   3'- caGGGUGGCA------------AUGCGUGGUUa-----------GGUGC- -5'
30158 5' -53.6 NC_006273.1 + 52563 0.66 0.98587
Target:  5'- cGUCgCCGCCGUUGCcacaggaACCGGugccUCCGCa -3'
miRNA:   3'- -CAG-GGUGGCAAUGcg-----UGGUU----AGGUGc -5'
30158 5' -53.6 NC_006273.1 + 219047 0.66 0.98587
Target:  5'- aUCaUACCGUaACGCGCCAGUUCGu- -3'
miRNA:   3'- cAGgGUGGCAaUGCGUGGUUAGGUgc -5'
30158 5' -53.6 NC_006273.1 + 208750 0.66 0.984147
Target:  5'- -gCCaCGCCGUUGCagGCCAcgaacaacGUCCACGu -3'
miRNA:   3'- caGG-GUGGCAAUGcgUGGU--------UAGGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.