miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30158 5' -53.6 NC_006273.1 + 68865 0.66 0.984147
Target:  5'- --aCCACCGUUACcaGUACCA--CCGCu -3'
miRNA:   3'- cagGGUGGCAAUG--CGUGGUuaGGUGc -5'
30158 5' -53.6 NC_006273.1 + 63819 0.66 0.984147
Target:  5'- cUUCCACCGgca-GCGgCAcgCCGCGa -3'
miRNA:   3'- cAGGGUGGCaaugCGUgGUuaGGUGC- -5'
30158 5' -53.6 NC_006273.1 + 94218 0.66 0.984147
Target:  5'- -gCCCGCCGccccccgGCGCA---GUCCGCGg -3'
miRNA:   3'- caGGGUGGCaa-----UGCGUgguUAGGUGC- -5'
30158 5' -53.6 NC_006273.1 + 208750 0.66 0.984147
Target:  5'- -gCCaCGCCGUUGCagGCCAcgaacaacGUCCACGu -3'
miRNA:   3'- caGG-GUGGCAAUGcgUGGU--------UAGGUGC- -5'
30158 5' -53.6 NC_006273.1 + 33064 0.67 0.98304
Target:  5'- --aCCGCCGUcgggUGCGCGCCugcucgucaucgCCGCGc -3'
miRNA:   3'- cagGGUGGCA----AUGCGUGGuua---------GGUGC- -5'
30158 5' -53.6 NC_006273.1 + 31988 0.67 0.98227
Target:  5'- -aUCCGCUGUUGCGCgACCcgcgcgCCACc -3'
miRNA:   3'- caGGGUGGCAAUGCG-UGGuua---GGUGc -5'
30158 5' -53.6 NC_006273.1 + 233638 0.67 0.98227
Target:  5'- aGUgCCACCGU--CGUGCCGGcCCACc -3'
miRNA:   3'- -CAgGGUGGCAauGCGUGGUUaGGUGc -5'
30158 5' -53.6 NC_006273.1 + 196711 0.67 0.98227
Target:  5'- gGUCCgCGuCgCGUaGCGCuuCGAUCCACGa -3'
miRNA:   3'- -CAGG-GU-G-GCAaUGCGugGUUAGGUGC- -5'
30158 5' -53.6 NC_006273.1 + 38746 0.67 0.98227
Target:  5'- aGUgCCACCGU--CGUGCCGGcCCACc -3'
miRNA:   3'- -CAgGGUGGCAauGCGUGGUUaGGUGc -5'
30158 5' -53.6 NC_006273.1 + 208449 0.67 0.98227
Target:  5'- gGUCCCAgCGUgcCG-ACCAcaCCACGg -3'
miRNA:   3'- -CAGGGUgGCAauGCgUGGUuaGGUGC- -5'
30158 5' -53.6 NC_006273.1 + 47045 0.67 0.98023
Target:  5'- -aCCgACCGUUGCGCuGCCucaccUCCAUc -3'
miRNA:   3'- caGGgUGGCAAUGCG-UGGuu---AGGUGc -5'
30158 5' -53.6 NC_006273.1 + 195482 0.67 0.98023
Target:  5'- -gUCCACCuaggagggUGCGCGcucggggacCCAGUCCGCGg -3'
miRNA:   3'- caGGGUGGca------AUGCGU---------GGUUAGGUGC- -5'
30158 5' -53.6 NC_006273.1 + 227384 0.67 0.98023
Target:  5'- --gCCACCGUcaguCGCACCA--CCugGg -3'
miRNA:   3'- cagGGUGGCAau--GCGUGGUuaGGugC- -5'
30158 5' -53.6 NC_006273.1 + 234506 0.67 0.98023
Target:  5'- ----uGCCGUUGCGCuggGCCAuggCCGCGg -3'
miRNA:   3'- cagggUGGCAAUGCG---UGGUua-GGUGC- -5'
30158 5' -53.6 NC_006273.1 + 589 0.67 0.98023
Target:  5'- -gUCCACCuaggagggUGCGCGcucggggacCCAGUCCGCGg -3'
miRNA:   3'- caGGGUGGca------AUGCGU---------GGUUAGGUGC- -5'
30158 5' -53.6 NC_006273.1 + 108524 0.67 0.98023
Target:  5'- cGUCgCCACCG--ACGCACaUAcgCCGCu -3'
miRNA:   3'- -CAG-GGUGGCaaUGCGUG-GUuaGGUGc -5'
30158 5' -53.6 NC_006273.1 + 68221 0.67 0.97802
Target:  5'- -gCCCGCCGUgGC-CACCAA-CgGCGg -3'
miRNA:   3'- caGGGUGGCAaUGcGUGGUUaGgUGC- -5'
30158 5' -53.6 NC_006273.1 + 136734 0.67 0.97802
Target:  5'- aUCCagACCucaugUACGcCACCGAUCCGCa -3'
miRNA:   3'- cAGGg-UGGca---AUGC-GUGGUUAGGUGc -5'
30158 5' -53.6 NC_006273.1 + 116206 0.67 0.97802
Target:  5'- cGUCCCcagguGCaGcUGCGCGCCGGucucuuUCCACGg -3'
miRNA:   3'- -CAGGG-----UGgCaAUGCGUGGUU------AGGUGC- -5'
30158 5' -53.6 NC_006273.1 + 41766 0.67 0.97802
Target:  5'- -aCUCGCUGUUGCGCcACCucuUCCAg- -3'
miRNA:   3'- caGGGUGGCAAUGCG-UGGuu-AGGUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.